Click here to switch to the map view.

The map label for this gene is glgX [H]

Identifier: 66767375

GI number: 66767375

Start: 1261365

End: 1263494

Strand: Reverse

Name: glgX [H]

Synonym: XC_1047

Alternate gene names: 66767375

Gene position: 1263494-1261365 (Counterclockwise)

Preceding gene: 66767379

Following gene: 77761126

Centisome position: 24.54

GC content: 62.96

Gene sequence:

>2130_bases
ATGCGACATCCCGCCAGCGCGGCTTACGCCACCCCCTCCCGCATCCGCCAAGGCCGCCCGTTCCCACGCGGCGCCATCTT
CGATGGCAAGGGCACCAACTTTGCGCTGTTTTCCGCGCACGCCACGCGTGTGGAGCTGTGCCTGTTCGACGAACAGGGCA
ACGAGAGCCGTGTCGACCTGCCCGAGTACACCAACGAGATCTGGCATGGCTATCTGCCCGACGTAAAGCCCGGCCAGCGC
TACGGCTACCGCGTGCACGGTCCCTATGCACCCACCGAGGGACACCGGTTCAACCACAACAAGCTGTTGCTGGATCCGTA
TGCGCGCGAACTCGATGGCGACCTGGTGTGGGCCGATGAGTTGTATGGCTACACGGTCGGGCATCCTGATGGCGACCTGA
GCTTCGACGAGCGCGACAGCGCGCCGTTCATGCCCAAGTGCGTGGTGGTTGAAGACACCTACGACTGGGAAGACGATGCG
CGCCTGCTCAAGCCGTGGAACGAGACGGTGATCTACGAGACCCACGTACGTGGCTACACCATGCGCAACGCGCAGGTGCC
TGAAGCCGTGCGCGGCACCTTCGCCGGCCTGGCGCAGCCATCGGTGCTGCAGTACATCAAGGACCTGGGCATTACGGCGG
TGGAACTGCTGCCGGTGCATGCGTATCTGGACGATCAGCATCTGCTGGACAAGGGCCTGCGCAACTATTGGGGCTACAAC
ACCATCAGTTTCTTCGCGCTCAAGTCGCGCTACCTTTCCAGCGGCCATCGCGACGAGTTCCGCGACATGGTCAAGGCGAT
GCACAAGCAAGGCCTGGAAGTGATCCTGGACGTGGTCTACAACCACACTGCCGAAGGCAGCGAACTGGGGCCGACGCTCT
CGTTCAAGGGCATCGACAACGCCAGCTATTACCGTCTTGCCGAAGACAAGCGTTACTACATCAACGACACCGGCACCGGC
AATACGCTTAACCTGAGCAACTCGCGGGTGATCCAGTTCGTCAACGATTCGCTGCGCTACTGGGCCGGCGAAATGCACGT
GGACGGGTTCCGCTTCGACCTGGCCACGATCCTGGGCCGCGAGCCGAGCGGCTTCGATCAACGCGGTGGCTTCCTGGATG
CCTGCAACCAGGATCCGCTGCTGTCGGAAGTCAAGCTCATTGCCGAACCATGGGATTGCGGCCCGGGCGGCTATCAGGTG
GGGCATTTCCCGCCGGGTTGGTCGGAGTGGAATGACAAATTCCGCGACAACGCGCGCGAGTTCTGGAAGGGCGAGGACGG
CAAGCTGGCAGAGTTTGCTACCCGCTTCACGGGCTCTGCGGACCTGTTTGACCGCAGCGGTCGCCGCCCCTGGGCATCGG
TAAACTTCATCACCGCGCACGACGGTTTTACGCTGCGCGATCTGGTGAGCTACAACGAGAAGCACAACATCGACAACGGC
GAGGACAACCGCGACGGTTCCTCCAACGACGGCTCGTGCAACTACGGCGAAGAAGGCGAGACCGACAACGCCGAAATCCT
GCAACTTCGCGAGCGGCAGATGAAGAACCTGCTCGCCACGCTGCTGCTGTCGCAAGGCACGCCGATGATACTGGCCGGCG
ACGAGCGGGCGCAGTCGCAGGGCGGCAACAACAACACCTATTGCCAGGACAACGAGATCACCTGGCTCGAATGGGAGAAC
GACCCCACCGACGGCCGCCTGACCGACTTCGTCAAATCACTGACCGCGCTACGTAAGCGCTACCCGATCCTGTCGCGTGG
CCGCTTCCTCAATGGGCAGTACAACGAAGAAGCCGGCCTGCGCGATCTGACCTGGCTCAATCCGGGCGGCACCGAGATGG
ACGACGCGCACTGGACCGATGCCGGCGCGCGCTCGGTAGGACTGCTGCTGGAAGGCAAGGCGCAGACCTCTGGCGTCAAG
GAACGCGGCAACGACGCCACCTTGCTGATCGTCATCAATGCGTACCACGAGGGCGTGACCTTCACCCTGCCCTCCTCCGA
CGAACCGGTGCACTGGAAGCTCGCGCTGTCTACCGACGAAGCGCTGGAAGTGGACAGCATGCCGGCCGGCGCCAGCGAGT
TCCTGGCACCGCCGCGCAGCATCACGGTGTTCGAGTGCAAGGTGGGCTGA

Upstream 100 bases:

>100_bases
CTCACGCCGCCCCACTGCGGCCGTGACGTGTCTTGCACAGCCTCACCAGCAATGCTTGAGCCCCCTAATGCCGGCGTGCC
GGTTCACGAGATCCTGCCCA

Downstream 100 bases:

>100_bases
TTGCCTGAGCGTGCGTTAGCAAGCCCGCCTTTCATTGGATGGAAGGCGGGCTTTTTTGTGGCTACTTGTTTGTATGCAGA
TATCTGGCAGCCTGCAGCGC

Product: glycogen debranching enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 709; Mature: 709

Protein sequence:

>709_residues
MRHPASAAYATPSRIRQGRPFPRGAIFDGKGTNFALFSAHATRVELCLFDEQGNESRVDLPEYTNEIWHGYLPDVKPGQR
YGYRVHGPYAPTEGHRFNHNKLLLDPYARELDGDLVWADELYGYTVGHPDGDLSFDERDSAPFMPKCVVVEDTYDWEDDA
RLLKPWNETVIYETHVRGYTMRNAQVPEAVRGTFAGLAQPSVLQYIKDLGITAVELLPVHAYLDDQHLLDKGLRNYWGYN
TISFFALKSRYLSSGHRDEFRDMVKAMHKQGLEVILDVVYNHTAEGSELGPTLSFKGIDNASYYRLAEDKRYYINDTGTG
NTLNLSNSRVIQFVNDSLRYWAGEMHVDGFRFDLATILGREPSGFDQRGGFLDACNQDPLLSEVKLIAEPWDCGPGGYQV
GHFPPGWSEWNDKFRDNAREFWKGEDGKLAEFATRFTGSADLFDRSGRRPWASVNFITAHDGFTLRDLVSYNEKHNIDNG
EDNRDGSSNDGSCNYGEEGETDNAEILQLRERQMKNLLATLLLSQGTPMILAGDERAQSQGGNNNTYCQDNEITWLEWEN
DPTDGRLTDFVKSLTALRKRYPILSRGRFLNGQYNEEAGLRDLTWLNPGGTEMDDAHWTDAGARSVGLLLEGKAQTSGVK
ERGNDATLLIVINAYHEGVTFTLPSSDEPVHWKLALSTDEALEVDSMPAGASEFLAPPRSITVFECKVG

Sequences:

>Translated_709_residues
MRHPASAAYATPSRIRQGRPFPRGAIFDGKGTNFALFSAHATRVELCLFDEQGNESRVDLPEYTNEIWHGYLPDVKPGQR
YGYRVHGPYAPTEGHRFNHNKLLLDPYARELDGDLVWADELYGYTVGHPDGDLSFDERDSAPFMPKCVVVEDTYDWEDDA
RLLKPWNETVIYETHVRGYTMRNAQVPEAVRGTFAGLAQPSVLQYIKDLGITAVELLPVHAYLDDQHLLDKGLRNYWGYN
TISFFALKSRYLSSGHRDEFRDMVKAMHKQGLEVILDVVYNHTAEGSELGPTLSFKGIDNASYYRLAEDKRYYINDTGTG
NTLNLSNSRVIQFVNDSLRYWAGEMHVDGFRFDLATILGREPSGFDQRGGFLDACNQDPLLSEVKLIAEPWDCGPGGYQV
GHFPPGWSEWNDKFRDNAREFWKGEDGKLAEFATRFTGSADLFDRSGRRPWASVNFITAHDGFTLRDLVSYNEKHNIDNG
EDNRDGSSNDGSCNYGEEGETDNAEILQLRERQMKNLLATLLLSQGTPMILAGDERAQSQGGNNNTYCQDNEITWLEWEN
DPTDGRLTDFVKSLTALRKRYPILSRGRFLNGQYNEEAGLRDLTWLNPGGTEMDDAHWTDAGARSVGLLLEGKAQTSGVK
ERGNDATLLIVINAYHEGVTFTLPSSDEPVHWKLALSTDEALEVDSMPAGASEFLAPPRSITVFECKVG
>Mature_709_residues
MRHPASAAYATPSRIRQGRPFPRGAIFDGKGTNFALFSAHATRVELCLFDEQGNESRVDLPEYTNEIWHGYLPDVKPGQR
YGYRVHGPYAPTEGHRFNHNKLLLDPYARELDGDLVWADELYGYTVGHPDGDLSFDERDSAPFMPKCVVVEDTYDWEDDA
RLLKPWNETVIYETHVRGYTMRNAQVPEAVRGTFAGLAQPSVLQYIKDLGITAVELLPVHAYLDDQHLLDKGLRNYWGYN
TISFFALKSRYLSSGHRDEFRDMVKAMHKQGLEVILDVVYNHTAEGSELGPTLSFKGIDNASYYRLAEDKRYYINDTGTG
NTLNLSNSRVIQFVNDSLRYWAGEMHVDGFRFDLATILGREPSGFDQRGGFLDACNQDPLLSEVKLIAEPWDCGPGGYQV
GHFPPGWSEWNDKFRDNAREFWKGEDGKLAEFATRFTGSADLFDRSGRRPWASVNFITAHDGFTLRDLVSYNEKHNIDNG
EDNRDGSSNDGSCNYGEEGETDNAEILQLRERQMKNLLATLLLSQGTPMILAGDERAQSQGGNNNTYCQDNEITWLEWEN
DPTDGRLTDFVKSLTALRKRYPILSRGRFLNGQYNEEAGLRDLTWLNPGGTEMDDAHWTDAGARSVGLLLEGKAQTSGVK
ERGNDATLLIVINAYHEGVTFTLPSSDEPVHWKLALSTDEALEVDSMPAGASEFLAPPRSITVFECKVG

Specific function: Hydrolyzes The Alpha-1,6-Glucosidic Linkages In Glycogen Which Has First Been Partially Depolymerized By Phosphorylase. Shows Only Very Little Activity With Native Glycogen. [C]

COG id: COG1523

COG function: function code G; Type II secretory pathway, pullulanase PulA and related glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=199, Percent_Identity=29.6482412060301, Blast_Score=72, Evalue=2e-12,
Organism=Escherichia coli, GI2367229, Length=657, Percent_Identity=49.923896499239, Blast_Score=632, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR011837
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02922 CBM_48 [H]

EC number: 3.2.1.- [C]

Molecular weight: Translated: 79791; Mature: 79791

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHPASAAYATPSRIRQGRPFPRGAIFDGKGTNFALFSAHATRVELCLFDEQGNESRVDL
CCCCCCCCCCCHHHHHCCCCCCCCCEECCCCCCEEEEECCCCEEEEEEEECCCCCCCCCC
PEYTNEIWHGYLPDVKPGQRYGYRVHGPYAPTEGHRFNHNKLLLDPYARELDGDLVWADE
HHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCHHHHCCCCEEEEHH
LYGYTVGHPDGDLSFDERDSAPFMPKCVVVEDTYDWEDDARLLKPWNETVIYETHVRGYT
HCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCEEEEEEECCCEE
MRNAQVPEAVRGTFAGLAQPSVLQYIKDLGITAVELLPVHAYLDDQHLLDKGLRNYWGYN
ECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCC
TISFFALKSRYLSSGHRDEFRDMVKAMHKQGLEVILDVVYNHTAEGSELGPTLSFKGIDN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCCCC
ASYYRLAEDKRYYINDTGTGNTLNLSNSRVIQFVNDSLRYWAGEMHVDGFRFDLATILGR
CCEEEEECCCEEEEECCCCCCEEECCCCCEEEEHHHHHHHHCCCEECCCHHHHHHHHHCC
EPSGFDQRGGFLDACNQDPLLSEVKLIAEPWDCGPGGYQVGHFPPGWSEWNDKFRDNARE
CCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
FWKGEDGKLAEFATRFTGSADLFDRSGRRPWASVNFITAHDGFTLRDLVSYNEKHNIDNG
HHCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHCCHHCCCCCC
EDNRDGSSNDGSCNYGEEGETDNAEILQLRERQMKNLLATLLLSQGTPMILAGDERAQSQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHC
GGNNNTYCQDNEITWLEWENDPTDGRLTDFVKSLTALRKRYPILSRGRFLNGQYNEEAGL
CCCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCC
RDLTWLNPGGTEMDDAHWTDAGARSVGLLLEGKAQTSGVKERGNDATLLIVINAYHEGVT
CEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCHHCCHHHCCCCEEEEEEEEECCCCEE
FTLPSSDEPVHWKLALSTDEALEVDSMPAGASEFLAPPRSITVFECKVG
EECCCCCCCEEEEEEECCCCCEECCCCCCCHHHHCCCCCCEEEEEEECC
>Mature Secondary Structure
MRHPASAAYATPSRIRQGRPFPRGAIFDGKGTNFALFSAHATRVELCLFDEQGNESRVDL
CCCCCCCCCCCHHHHHCCCCCCCCCEECCCCCCEEEEECCCCEEEEEEEECCCCCCCCCC
PEYTNEIWHGYLPDVKPGQRYGYRVHGPYAPTEGHRFNHNKLLLDPYARELDGDLVWADE
HHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCHHHHCCCCEEEEHH
LYGYTVGHPDGDLSFDERDSAPFMPKCVVVEDTYDWEDDARLLKPWNETVIYETHVRGYT
HCCEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHCCCCCEEEEEEECCCEE
MRNAQVPEAVRGTFAGLAQPSVLQYIKDLGITAVELLPVHAYLDDQHLLDKGLRNYWGYN
ECCCCCCHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCC
TISFFALKSRYLSSGHRDEFRDMVKAMHKQGLEVILDVVYNHTAEGSELGPTLSFKGIDN
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCCCC
ASYYRLAEDKRYYINDTGTGNTLNLSNSRVIQFVNDSLRYWAGEMHVDGFRFDLATILGR
CCEEEEECCCEEEEECCCCCCEEECCCCCEEEEHHHHHHHHCCCEECCCHHHHHHHHHCC
EPSGFDQRGGFLDACNQDPLLSEVKLIAEPWDCGPGGYQVGHFPPGWSEWNDKFRDNARE
CCCCCCCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
FWKGEDGKLAEFATRFTGSADLFDRSGRRPWASVNFITAHDGFTLRDLVSYNEKHNIDNG
HHCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHCCHHCCCCCC
EDNRDGSSNDGSCNYGEEGETDNAEILQLRERQMKNLLATLLLSQGTPMILAGDERAQSQ
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHC
GGNNNTYCQDNEITWLEWENDPTDGRLTDFVKSLTALRKRYPILSRGRFLNGQYNEEAGL
CCCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCC
RDLTWLNPGGTEMDDAHWTDAGARSVGLLLEGKAQTSGVKERGNDATLLIVINAYHEGVT
CEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCHHCCHHHCCCCEEEEEEEEECCCCEE
FTLPSSDEPVHWKLALSTDEALEVDSMPAGASEFLAPPRSITVFECKVG
EECCCCCCCEEEEEEECCCCCEECCCCCCCHHHHCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Glycosylases; Glycosidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]