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The map label for this gene is ymdB [C]

Identifier: 66767312

GI number: 66767312

Start: 1176612

End: 1177151

Strand: Reverse

Name: ymdB [C]

Synonym: XC_0980

Alternate gene names: 66767312

Gene position: 1177151-1176612 (Counterclockwise)

Preceding gene: 66767313

Following gene: 66767303

Centisome position: 22.86

GC content: 61.85

Gene sequence:

>540_bases
ATGAGAATCGAAGTCTGGCAAGGCGACATTACCCAACTCGACGTTGACGTCATCGTCAACGCGGCCAACGAATCACTGCT
GGGCGGTGGTGGCGTCGATGGCGCGATCCATCGCGCCGCAGGCCCGCGCCTGTTGGAGGCCTGCGAGGCGTTGCCGGAAG
TGCGCCCAGGCGTGCGTTGCCCCACCGGCGAAATCCGCATCACCGATGGCTTCGACCTGAAAGCACGGCACATCTTCCAC
ACAGTGGGACCGGTATGGCGCGACGGCAAGCACAACGAACCGGAACAGCTCGCCAACTGCTATTGGCAGTCGCTGAAGTT
GGCCGAGCAGATGATGCTGCACTCGATTGCGTTTCCGGCCATCAGCTGCGGTATCTACGGTTATCCGCTTTACCAGGCGG
CACGCATTGCCGTCACTGAAACCCGCGACTGGCAGCGCTCGCACAAGGTGCCCAAGCACATCGTGCTGGTGGCCTATAAC
GAAGCGACCTACAAGGCCTATCACCAGGCGCTCGCCACGCAGGAAACCGCTGCTGCCTGA

Upstream 100 bases:

>100_bases
ATGTGGTCGCATCGTGTGAGATGAATGGCCCGTAGCGTGAGCGTCCCGCAGCGCCTGATCCATCACGCGCTCATCATGCA
AATCCCATAACTATCGCGCT

Downstream 100 bases:

>100_bases
GTTGAACGACTGCAAGCGTGATGGTTTTCAGACAGGCGCCACAGGGCGCCTGTCTTGCTTTGTGCACGGCACAGTCTTGC
TTGTGATGCACTTTGTGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MRIEVWQGDITQLDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRCPTGEIRITDGFDLKARHIFH
TVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLYQAARIAVTETRDWQRSHKVPKHIVLVAYN
EATYKAYHQALATQETAAA

Sequences:

>Translated_179_residues
MRIEVWQGDITQLDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRCPTGEIRITDGFDLKARHIFH
TVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLYQAARIAVTETRDWQRSHKVPKHIVLVAYN
EATYKAYHQALATQETAAA
>Mature_179_residues
MRIEVWQGDITQLDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRCPTGEIRITDGFDLKARHIFH
TVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLYQAARIAVTETRDWQRSHKVPKHIVLVAYN
EATYKAYHQALATQETAAA

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI117968621, Length=174, Percent_Identity=47.1264367816092, Blast_Score=156, Evalue=1e-38,
Organism=Homo sapiens, GI13569840, Length=149, Percent_Identity=46.9798657718121, Blast_Score=141, Evalue=4e-34,
Organism=Homo sapiens, GI207450721, Length=171, Percent_Identity=33.9181286549708, Blast_Score=97, Evalue=9e-21,
Organism=Homo sapiens, GI154813199, Length=175, Percent_Identity=36.5714285714286, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI8923143, Length=171, Percent_Identity=33.9181286549708, Blast_Score=96, Evalue=1e-20,
Organism=Homo sapiens, GI226371718, Length=177, Percent_Identity=32.2033898305085, Blast_Score=70, Evalue=9e-13,
Organism=Homo sapiens, GI226371710, Length=176, Percent_Identity=30.6818181818182, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371706, Length=176, Percent_Identity=30.6818181818182, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371716, Length=145, Percent_Identity=32.4137931034483, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371714, Length=145, Percent_Identity=32.4137931034483, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371712, Length=145, Percent_Identity=32.4137931034483, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI165377137, Length=150, Percent_Identity=28.6666666666667, Blast_Score=67, Evalue=8e-12,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=51.4450867052023, Blast_Score=169, Evalue=7e-44,
Organism=Caenorhabditis elegans, GI17538214, Length=170, Percent_Identity=41.7647058823529, Blast_Score=122, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24586353, Length=145, Percent_Identity=35.1724137931034, Blast_Score=85, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3184_XANCP (Q8P5Z8)

Other databases:

- EMBL:   AE008922
- RefSeq:   NP_638530.1
- ProteinModelPortal:   Q8P5Z8
- SMR:   Q8P5Z8
- GeneID:   999289
- GenomeReviews:   AE008922_GR
- KEGG:   xcc:XCC3184
- HOGENOM:   HBG682503
- OMA:   ARHVIHT
- ProtClustDB:   PRK00431
- BioCyc:   XCAM190485:XCC3184-MONOMER
- HAMAP:   MF_01205_B
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 19815; Mature: 19815

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIEVWQGDITQLDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRC
CEEEEECCCCCEEEHHHEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCC
PTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPA
CCCCEEEECCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISCGIYGYPLYQAARIAVTETRDWQRSHKVPKHIVLVAYNEATYKAYHQALATQETAAA
HHCCCCCCCHHHHHEEEEECCCCHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIEVWQGDITQLDVDVIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRC
CEEEEECCCCCEEEHHHEEECCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCCC
PTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPA
CCCCEEEECCCCCHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISCGIYGYPLYQAARIAVTETRDWQRSHKVPKHIVLVAYNEATYKAYHQALATQETAAA
HHCCCCCCCHHHHHEEEEECCCCHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217