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The map label for this gene is yjhH [C]

Identifier: 66767286

GI number: 66767286

Start: 1146700

End: 1147617

Strand: Reverse

Name: yjhH [C]

Synonym: XC_0954

Alternate gene names: 66767286

Gene position: 1147617-1146700 (Counterclockwise)

Preceding gene: 66767288

Following gene: 66767285

Centisome position: 22.29

GC content: 67.43

Gene sequence:

>918_bases
ATGAGCAGCAGATACACACCTTCGGAAATGGCCCAAGCGCTTGGTGCCGGGCTCCTGTCGTTCCCGGTGACGCATTTCGA
TGCGGACATGGCTTTCGACGAGCCCGCCTACCGCAGCAATCTGGACTGGCTGTCCTCGCACCCGGCCGCCGGGTTGTTTG
CTGCCGGCGGCACCGGCGAGTTGTTTTCGCTGACCCTGGACGAAGTGGACCGCGCAGTGCGCGCGGCCGTGACCCAGACC
GCCGGGCGCATGCCGGTAATCGCGCCGGCCGGCTACGGCACCGCGATTGCCGTGGCCATGGCGCAGGCGGCCGAGCGTAA
CGATGCCGACGGCATCTTGCTGTTTCCGCCGTATCTCACCGAGTGCGATGCCGACGGCGTGGCCGAGCATGTCGAGCGCG
TCTGCAAGGCGACCTCGCTGGGCGTGATTGTCTACGGCCGCGCCAATGCCCGGCTCGATGACGTGGCGCTGGCGCGGGTG
GCCGAGCGCTGCCCCAACCTGATGGGCTACAAGGACGGCATCGGCGATGTAGACCGCATGACGCGTATCTACGCGCGGCT
GGGCGATCGCCTGCTCTACGTCGGCGGCCTGCCGACGGCCGAAACCTTTGCGCTGCCGTACCTGGAAATGGGGGTGACCA
CGTATTCGTCGGCCATCTTCAATTTCCTGCCGGAATGGGCGCTGTCGTTCTATGCGGCAGTGCGCGCGCGCGACCACGCC
ACCATCTACCGCGAGCTCAACGACTTCGTGCTGCCGTACACCGTGCTGCGCAATCGCCGCGCCGGCTATGCGGTGTCGAT
CGTCAAGGCCGGCATGCGTGCCGTGGGTCGCCCGGCCGGCCCGGTACGTACGCCGCTGGCCGATCTGACCGAAGACGAAT
TCGCCCAGCCCACGCAGCTCATCGGAGGGCGCCGCTGA

Upstream 100 bases:

>100_bases
TCGATTCAATTTATGTATCAAACAATACGTCCTTTGGTTTGGACCGGCAACGATGCGTCTTCCTAGCATCACTCCACCCC
CGCCTAGGACCGTTCGCCTC

Downstream 100 bases:

>100_bases
TGCACGCGATCCTGGGTGAATCGTTGATCGGCCAGCGCAGCGTGCAGGGTGCCGGCGTTGCCTTGCAGGGCATGGATGCG
GCCACGGGCGAGGCGCTGCA

Product: 5-dehydro-4-deoxyglucarate dehydratase

Products: NA

Alternate protein names: 5-keto-4-deoxy-glucarate dehydratase; KDGDH

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSSRYTPSEMAQALGAGLLSFPVTHFDADMAFDEPAYRSNLDWLSSHPAAGLFAAGGTGELFSLTLDEVDRAVRAAVTQT
AGRMPVIAPAGYGTAIAVAMAQAAERNDADGILLFPPYLTECDADGVAEHVERVCKATSLGVIVYGRANARLDDVALARV
AERCPNLMGYKDGIGDVDRMTRIYARLGDRLLYVGGLPTAETFALPYLEMGVTTYSSAIFNFLPEWALSFYAAVRARDHA
TIYRELNDFVLPYTVLRNRRAGYAVSIVKAGMRAVGRPAGPVRTPLADLTEDEFAQPTQLIGGRR

Sequences:

>Translated_305_residues
MSSRYTPSEMAQALGAGLLSFPVTHFDADMAFDEPAYRSNLDWLSSHPAAGLFAAGGTGELFSLTLDEVDRAVRAAVTQT
AGRMPVIAPAGYGTAIAVAMAQAAERNDADGILLFPPYLTECDADGVAEHVERVCKATSLGVIVYGRANARLDDVALARV
AERCPNLMGYKDGIGDVDRMTRIYARLGDRLLYVGGLPTAETFALPYLEMGVTTYSSAIFNFLPEWALSFYAAVRARDHA
TIYRELNDFVLPYTVLRNRRAGYAVSIVKAGMRAVGRPAGPVRTPLADLTEDEFAQPTQLIGGRR
>Mature_304_residues
SSRYTPSEMAQALGAGLLSFPVTHFDADMAFDEPAYRSNLDWLSSHPAAGLFAAGGTGELFSLTLDEVDRAVRAAVTQTA
GRMPVIAPAGYGTAIAVAMAQAAERNDADGILLFPPYLTECDADGVAEHVERVCKATSLGVIVYGRANARLDDVALARVA
ERCPNLMGYKDGIGDVDRMTRIYARLGDRLLYVGGLPTAETFALPYLEMGVTTYSSAIFNFLPEWALSFYAAVRARDHAT
IYRELNDFVLPYTVLRNRRAGYAVSIVKAGMRAVGRPAGPVRTPLADLTEDEFAQPTQLIGGRR

Specific function: Unknown

COG id: COG0329

COG function: function code EM; Dihydrodipicolinate synthase/N-acetylneuraminate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHDPS family

Homologues:

Organism=Escherichia coli, GI87082415, Length=267, Percent_Identity=26.2172284644195, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1786463, Length=279, Percent_Identity=24.3727598566308, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): KDGD_XANC8 (Q4UY45)

Other databases:

- EMBL:   CP000050
- RefSeq:   YP_242048.1
- HSSP:   P63945
- ProteinModelPortal:   Q4UY45
- STRING:   Q4UY45
- GeneID:   3381758
- GenomeReviews:   CP000050_GR
- KEGG:   xcb:XC_0954
- eggNOG:   COG0329
- HOGENOM:   HBG358848
- OMA:   RNRKKGY
- ProtClustDB:   PRK03620
- BioCyc:   XCAM314565:XC_0954-MONOMER
- HAMAP:   MF_00694
- InterPro:   IPR013785
- InterPro:   IPR017655
- InterPro:   IPR002220
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR12128
- TIGRFAMs:   TIGR03249

Pfam domain/function: PF00701 DHDPS

EC number: =4.2.1.41

Molecular weight: Translated: 32938; Mature: 32807

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRYTPSEMAQALGAGLLSFPVTHFDADMAFDEPAYRSNLDWLSSHPAAGLFAAGGTGE
CCCCCCHHHHHHHHHCHHHHHCHHHCCCCCCCCCCHHHCCCCHHHCCCCCCEEECCCCCC
LFSLTLDEVDRAVRAAVTQTAGRMPVIAPAGYGTAIAVAMAQAAERNDADGILLFPPYLT
EEEEEHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
ECDADGVAEHVERVCKATSLGVIVYGRANARLDDVALARVAERCPNLMGYKDGIGDVDRM
CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
TRIYARLGDRLLYVGGLPTAETFALPYLEMGVTTYSSAIFNFLPEWALSFYAAVRARDHA
HHHHHHHCCCEEEECCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIYRELNDFVLPYTVLRNRRAGYAVSIVKAGMRAVGRPAGPVRTPLADLTEDEFAQPTQL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHCCCHHH
IGGRR
HCCCC
>Mature Secondary Structure 
SSRYTPSEMAQALGAGLLSFPVTHFDADMAFDEPAYRSNLDWLSSHPAAGLFAAGGTGE
CCCCCHHHHHHHHHCHHHHHCHHHCCCCCCCCCCHHHCCCCHHHCCCCCCEEECCCCCC
LFSLTLDEVDRAVRAAVTQTAGRMPVIAPAGYGTAIAVAMAQAAERNDADGILLFPPYLT
EEEEEHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCCC
ECDADGVAEHVERVCKATSLGVIVYGRANARLDDVALARVAERCPNLMGYKDGIGDVDRM
CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
TRIYARLGDRLLYVGGLPTAETFALPYLEMGVTTYSSAIFNFLPEWALSFYAAVRARDHA
HHHHHHHCCCEEEECCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIYRELNDFVLPYTVLRNRRAGYAVSIVKAGMRAVGRPAGPVRTPLADLTEDEFAQPTQL
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHCCCHHH
IGGRR
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA