Click here to switch to the map view.

The map label for this gene is ycfQ [C]

Identifier: 66767163

GI number: 66767163

Start: 997212

End: 997865

Strand: Reverse

Name: ycfQ [C]

Synonym: XC_0830

Alternate gene names: 66767163

Gene position: 997865-997212 (Counterclockwise)

Preceding gene: 66767165

Following gene: 66767162

Centisome position: 19.38

GC content: 66.36

Gene sequence:

>654_bases
ATGTCCAGCTCGCCCCCCCTCAAGTCCAAGGCCAAGAGCAACGGCCCTGGGCGTCCCAAGGATCTTGGGAAACGCGCCGC
CATCCTGGGCGCCGCCCGCTCGCTGTTCATGGAGCAAGGTTTTGCGGGCGTCAGCATGGACGGCATCGCCGCCCTGGCGG
GCGTCTCCAAGCTGACCGTCTACAGCCACTTTGGCGACAAGGAAAGCCTGTTTGGCGAGGCGATCCGCGCACAATGCCAG
CACATGATGCCCGACGACCTGTTCGACCATGCGCCCGAAGGCGCGTTGCGCGAGCAGCTCATCGAGATCGCCGACGCCTT
CTTCGCCATGGTCAGCTCCGACTCGGCCATTGCCACCCACCGCATGATGATGGCGCCAGGTACCGGCGACGTGCACGTGC
GGGAGATGTTCTGGGACGCTGGCCCCAAGCGGACCCAACAGGCGCTGGCGGATTTCCTCAGCGCGCGCGTGGCCGACGGG
CAGCTGGAGATTCCCGACGTGGCCCGCGCCGCCGCGCAATTCTTCTGCCTGCTCAAGGGCGAGCTGTACGCGCTGATGAT
GTGCGGCCTGCACGGCCAGCCCGATCGCGCGCAGGTGGACGAGCACATCCACGCCAGCGTGGATTTCTTCCTGAGAGCCT
ATGTGCCGCGCTGA

Upstream 100 bases:

>100_bases
CCGGGGCAGACCACGACAGCGCAAGCGACTCACCGCAACGGTTAATGGACCGCGCGGTGCCGCCATATAAATATAGAACC
CGATGGTCTAGTATTGGCGC

Downstream 100 bases:

>100_bases
TCGGGCCTGCCCTTTGGTCGCGGTGACTTCCGGCACTGCGTGGTTTGGCGGCGCCCGGCGATGCTAGATGCGCCAGTTGC
CCCAAGCCCCGCTAAAATGC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Transcription Regulator Protein; Bacterial Regulatory Protein; Transcriptional Regulator Protein; TetR-Type Transcriptional Regulator; TetR-Family Trancriptional Regulatory Protein; Transcriptional Regulator Protein TetR Family; TetR-Like Virulence Regulator; TetR Family Transcriptional RegulatoR; Regulatory Protein Tetr; Calsymin Transcriptional Regulator; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; Bacterial Regulatory Protein TetR Family Protein; Transcription Regulator Protein Tetr Family; TetR Family Regulatory Protein; Transcription Regulator Protein TetR Family; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSSSPPLKSKAKSNGPGRPKDLGKRAAILGAARSLFMEQGFAGVSMDGIAALAGVSKLTVYSHFGDKESLFGEAIRAQCQ
HMMPDDLFDHAPEGALREQLIEIADAFFAMVSSDSAIATHRMMMAPGTGDVHVREMFWDAGPKRTQQALADFLSARVADG
QLEIPDVARAAAQFFCLLKGELYALMMCGLHGQPDRAQVDEHIHASVDFFLRAYVPR

Sequences:

>Translated_217_residues
MSSSPPLKSKAKSNGPGRPKDLGKRAAILGAARSLFMEQGFAGVSMDGIAALAGVSKLTVYSHFGDKESLFGEAIRAQCQ
HMMPDDLFDHAPEGALREQLIEIADAFFAMVSSDSAIATHRMMMAPGTGDVHVREMFWDAGPKRTQQALADFLSARVADG
QLEIPDVARAAAQFFCLLKGELYALMMCGLHGQPDRAQVDEHIHASVDFFLRAYVPR
>Mature_216_residues
SSSPPLKSKAKSNGPGRPKDLGKRAAILGAARSLFMEQGFAGVSMDGIAALAGVSKLTVYSHFGDKESLFGEAIRAQCQH
MMPDDLFDHAPEGALREQLIEIADAFFAMVSSDSAIATHRMMMAPGTGDVHVREMFWDAGPKRTQQALADFLSARVADGQ
LEIPDVARAAAQFFCLLKGELYALMMCGLHGQPDRAQVDEHIHASVDFFLRAYVPR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23526; Mature: 23395

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSPPLKSKAKSNGPGRPKDLGKRAAILGAARSLFMEQGFAGVSMDGIAALAGVSKLTV
CCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
YSHFGDKESLFGEAIRAQCQHMMPDDLFDHAPEGALREQLIEIADAFFAMVSSDSAIATH
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
RMMMAPGTGDVHVREMFWDAGPKRTQQALADFLSARVADGQLEIPDVARAAAQFFCLLKG
HHEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ELYALMMCGLHGQPDRAQVDEHIHASVDFFLRAYVPR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSSPPLKSKAKSNGPGRPKDLGKRAAILGAARSLFMEQGFAGVSMDGIAALAGVSKLTV
CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
YSHFGDKESLFGEAIRAQCQHMMPDDLFDHAPEGALREQLIEIADAFFAMVSSDSAIATH
HHHCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHH
RMMMAPGTGDVHVREMFWDAGPKRTQQALADFLSARVADGQLEIPDVARAAAQFFCLLKG
HHEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ELYALMMCGLHGQPDRAQVDEHIHASVDFFLRAYVPR
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA