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The map label for this gene is yncB [H]

Identifier: 66766624

GI number: 66766624

Start: 332580

End: 333608

Strand: Reverse

Name: yncB [H]

Synonym: XC_0280

Alternate gene names: 66766624

Gene position: 333608-332580 (Counterclockwise)

Preceding gene: 66766625

Following gene: 66766623

Centisome position: 6.48

GC content: 67.64

Gene sequence:

>1029_bases
ATGACATCGCTCACCAACCGCCGCATCGTGCTGGCCTCACGCCCGCACGGCGAACCCGGCACCGACAACTTCCGCATCGA
AGACGCCCCGGTGCCGCCAACCGGGCACAACCAGATCCTGGTCCGCAATCGCTTTTTGTCACTGGACCCGTACATGCGCG
GTCGCATGGACGAAGGCCCCTCGTACGCCGCGCCGGTCGCCATCGATGCGGTCATGGAAGGCGGCACCGTGGGCGAGGTG
CTGGAATCGAACCATCCCGATTACCACCCAGGCGAGCTCCTGGTGCTGGGCGGCGGCTGGCAGACCCACACCGTGCTGGA
GCCCACCGCGCCGCTGCGCAAGCTGCCCAAGGACGATGCGCTGCCGTTGAGCACCGCGCTCGGTGTGTACGGCATGCCCG
GCTTCACCGCTTACGCCGGCCTGCACGAGATCGGCAAGCCGCAAGCCGGCGAAACCCTGGTGGTGGCGGCGGCCAGCGGG
CCGGTCGGTGCCACCGTGGCCCAGCTGGCGCGCCTGCAAGGGCTGCGCGTGGTGGCCATCGCCGGTGGCGAAGAAAAAGT
CCGCTACCTGCGCGACACGCTGCGTGTCGACGTGGCGCTGGATCACCGCGCCGAGGATTTTGCCGCGCAATTGCGCGCCG
CCACGCCGGACGGCATCGACGTCTATTTCGAAAACGTCGGCGGCAAGGTGTTCGATGCGGTGATGCCGCAGCTCAACGAT
TTCGCGCGCATCCCGGTGTGCGGCGTGGTGGCCACCTACAACAGCCGCGGCCAGGTCGCGCCCGGGCCGGATCGGCTGCC
TGATTTCATCGGCCAGGTGCTGCGCAAGCGCCTGACCGTGCGCGGCTTCATCCAGCACGATTTCATCCGCCTGATGCCGG
CGTTTTTACGCGAAATGGGCCAGTGGCTGCGCGAGGACAAGATCCAGTACCGCGAGCACGTGCTGCACGGCCTGGACAGC
GCACCACAAGGGCTGATCAGCCTGCTGCGCGGCGAAAACTTCGGCAAGGCCGTGGTCGCACTCGACTGA

Upstream 100 bases:

>100_bases
ACTGCGCCACCGCGCTCGCCATTCACTCACCTCGCGCAGCCGCACGGCGGCTGTGCCCCCACGACCGCGCCTTGCGCGGT
CCCTTCCGCGAGGAATTCGC

Downstream 100 bases:

>100_bases
GTCGCGCTGCCATACCTGCATCCGTATCACTGCTTCATTTACCACCTCCCAACACGCAAGGAACCTCATGACTGTCCCCG
CATTTGGCCTCGGTACGTTT

Product: quinone oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTSLTNRRIVLASRPHGEPGTDNFRIEDAPVPPTGHNQILVRNRFLSLDPYMRGRMDEGPSYAAPVAIDAVMEGGTVGEV
LESNHPDYHPGELLVLGGGWQTHTVLEPTAPLRKLPKDDALPLSTALGVYGMPGFTAYAGLHEIGKPQAGETLVVAAASG
PVGATVAQLARLQGLRVVAIAGGEEKVRYLRDTLRVDVALDHRAEDFAAQLRAATPDGIDVYFENVGGKVFDAVMPQLND
FARIPVCGVVATYNSRGQVAPGPDRLPDFIGQVLRKRLTVRGFIQHDFIRLMPAFLREMGQWLREDKIQYREHVLHGLDS
APQGLISLLRGENFGKAVVALD

Sequences:

>Translated_342_residues
MTSLTNRRIVLASRPHGEPGTDNFRIEDAPVPPTGHNQILVRNRFLSLDPYMRGRMDEGPSYAAPVAIDAVMEGGTVGEV
LESNHPDYHPGELLVLGGGWQTHTVLEPTAPLRKLPKDDALPLSTALGVYGMPGFTAYAGLHEIGKPQAGETLVVAAASG
PVGATVAQLARLQGLRVVAIAGGEEKVRYLRDTLRVDVALDHRAEDFAAQLRAATPDGIDVYFENVGGKVFDAVMPQLND
FARIPVCGVVATYNSRGQVAPGPDRLPDFIGQVLRKRLTVRGFIQHDFIRLMPAFLREMGQWLREDKIQYREHVLHGLDS
APQGLISLLRGENFGKAVVALD
>Mature_341_residues
TSLTNRRIVLASRPHGEPGTDNFRIEDAPVPPTGHNQILVRNRFLSLDPYMRGRMDEGPSYAAPVAIDAVMEGGTVGEVL
ESNHPDYHPGELLVLGGGWQTHTVLEPTAPLRKLPKDDALPLSTALGVYGMPGFTAYAGLHEIGKPQAGETLVVAAASGP
VGATVAQLARLQGLRVVAIAGGEEKVRYLRDTLRVDVALDHRAEDFAAQLRAATPDGIDVYFENVGGKVFDAVMPQLNDF
ARIPVCGVVATYNSRGQVAPGPDRLPDFIGQVLRKRLTVRGFIQHDFIRLMPAFLREMGQWLREDKIQYREHVLHGLDSA
PQGLISLLRGENFGKAVVALD

Specific function: Unknown

COG id: COG2130

COG function: function code R; Putative NADP-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADP-dependent oxidoreductase L4BD family [H]

Homologues:

Organism=Homo sapiens, GI226059159, Length=329, Percent_Identity=37.0820668693009, Blast_Score=209, Evalue=4e-54,
Organism=Homo sapiens, GI226059133, Length=329, Percent_Identity=37.0820668693009, Blast_Score=209, Evalue=4e-54,
Organism=Homo sapiens, GI226246682, Length=345, Percent_Identity=34.4927536231884, Blast_Score=205, Evalue=6e-53,
Organism=Homo sapiens, GI226246680, Length=345, Percent_Identity=34.4927536231884, Blast_Score=205, Evalue=6e-53,
Organism=Homo sapiens, GI22748929, Length=345, Percent_Identity=34.4927536231884, Blast_Score=205, Evalue=6e-53,
Organism=Homo sapiens, GI226056130, Length=244, Percent_Identity=39.7540983606557, Blast_Score=176, Evalue=3e-44,
Organism=Homo sapiens, GI28557745, Length=344, Percent_Identity=27.906976744186, Blast_Score=98, Evalue=9e-21,
Organism=Escherichia coli, GI226510941, Length=335, Percent_Identity=56.7164179104478, Blast_Score=372, Evalue=1e-104,
Organism=Caenorhabditis elegans, GI133901712, Length=354, Percent_Identity=27.1186440677966, Blast_Score=144, Evalue=5e-35,
Organism=Caenorhabditis elegans, GI133901710, Length=354, Percent_Identity=27.1186440677966, Blast_Score=144, Evalue=5e-35,
Organism=Saccharomyces cerevisiae, GI6323504, Length=287, Percent_Identity=29.2682926829268, Blast_Score=103, Evalue=4e-23,
Organism=Saccharomyces cerevisiae, GI6319520, Length=239, Percent_Identity=23.4309623430962, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013149
- InterPro:   IPR002085
- InterPro:   IPR011032
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00107 ADH_zinc_N [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37158; Mature: 37027

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSLTNRRIVLASRPHGEPGTDNFRIEDAPVPPTGHNQILVRNRFLSLDPYMRGRMDEGP
CCCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCEEEEEECEECCCHHHHCCCCCCC
SYAAPVAIDAVMEGGTVGEVLESNHPDYHPGELLVLGGGWQTHTVLEPTAPLRKLPKDDA
CCCCCHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCEEECCCHHHHHCCCCCC
LPLSTALGVYGMPGFTAYAGLHEIGKPQAGETLVVAAASGPVGATVAQLARLQGLRVVAI
CCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEE
AGGEEKVRYLRDTLRVDVALDHRAEDFAAQLRAATPDGIDVYFENVGGKVFDAVMPQLND
ECCHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH
FARIPVCGVVATYNSRGQVAPGPDRLPDFIGQVLRKRLTVRGFIQHDFIRLMPAFLREMG
HCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWLREDKIQYREHVLHGLDSAPQGLISLLRGENFGKAVVALD
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure 
TSLTNRRIVLASRPHGEPGTDNFRIEDAPVPPTGHNQILVRNRFLSLDPYMRGRMDEGP
CCCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCEEEEEECEECCCHHHHCCCCCCC
SYAAPVAIDAVMEGGTVGEVLESNHPDYHPGELLVLGGGWQTHTVLEPTAPLRKLPKDDA
CCCCCHHHHHHHCCCCHHHHHHCCCCCCCCCCEEEECCCCCCCEEECCCHHHHHCCCCCC
LPLSTALGVYGMPGFTAYAGLHEIGKPQAGETLVVAAASGPVGATVAQLARLQGLRVVAI
CCHHHHHCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEE
AGGEEKVRYLRDTLRVDVALDHRAEDFAAQLRAATPDGIDVYFENVGGKVFDAVMPQLND
ECCHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHH
FARIPVCGVVATYNSRGQVAPGPDRLPDFIGQVLRKRLTVRGFIQHDFIRLMPAFLREMG
HCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWLREDKIQYREHVLHGLDSAPQGLISLLRGENFGKAVVALD
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]