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The map label for this gene is yhdP [H]

Identifier: 66048258

GI number: 66048258

Start: 5973194

End: 5974534

Strand: Direct

Name: yhdP [H]

Synonym: Psyr_5034

Alternate gene names: 66048258

Gene position: 5973194-5974534 (Clockwise)

Preceding gene: 66048257

Following gene: 66048267

Centisome position: 98.02

GC content: 59.88

Gene sequence:

>1341_bases
ATGGACCCTTCCCCTAGTTTTAACCTGTCTTCACTCTTCGCCGATTTCGGCATGATTCTTTTTGCTTTGTTCCTGGTCCT
GCTCAACGGCTTTTTCGTTGCGGCAGAGTTCGCCATGGTCAAACTGCGCTCGACCAAGGTTGAAGCCATTGCCGACAAGA
ACGGCTGGCGCGGGCACATTCTGCGCAAGGTCCATGGCCAGCTGGACGCCTACCTTTCGGCCTGCCAGCTGGGGATCACC
CTCGCCTCTCTGGGCCTGGGCTGGGTCGGTGAACCGGCCTTCGCGCACCTGCTGGAGCCGTTGCTCGCGGCGATGGGCGT
GGACACTCCGGAATTGATCAAGGGCGTGTCGTTCTTTACCGCCTTCTTCATCATTTCCTATCTGCACATCGTCATCGGCG
AGCTGGCCCCCAAATCCTGGGCGATCCGCAAACCGGAGCTGTTGTCGCTGTGGACAGCGGCGCCGTTGTACTTCTTCTAC
TGGTTGATGTACCCGGCCATCTACCTGCTCAACGCCAGCGCCAACGCCATTTTGCGCATCGCCGGCCAGGGTGAGCCCGG
CCCGCACCATGAACACAGCTACAGCCGCGACGAATTGAAACTGATCCTGCACTCCAGCCGTGGCCAGGACCCCAGCGATC
AGGGCATGCGTGTGCTGGCGTCGGCTGTGGAAATGGGCGAGCTGGAAGTGGTCGACTGGGCCAACTCCCGCGAAGACATG
GTGTCACTGGACTTCAATGCGCCGCTCAAGGAAATCCTTGCCTTGTTCCGCCGTCACAAATTCAGCCGTTATCCGCTGTA
TGACGCTGAACGTGGCGAGTTCGTCGGCCTGCTGCACATCAAGGACCTGCTGCTGGAACTGGCAGCGCTGGACCATATTC
CGGAGTCGTTCAACCTGGCCGAGCTGACCCGCCCGCTGGAACGTGTTTCCCGGCACATGCCGCTGTCGCAGTTGCTCGAG
CAGTTCCGCAAGGGTGGTGCGCACTTCGCCGTGGTGGAAGAAGCCGACGGCAAGATCGTGGGCTACCTGACCATGGAAGA
CGTGCTCGAAGTGCTGGTGGGCGACATCCAGGACGAACACCGCAAGGTAGAGCGCGGCATTCTCGCCTATCAGCCCGGCA
AACTGCTGGTACGCGGTGACACGCCATTGTTCAAGATCGAGCGCCTGCTGGGCGTCGACCTGGATCACATCGAAGCCGAG
ACACTGGCCGGTCTGATCTACGACACACTCAAGCGCGTGCCGGAAGAAGAGGAACAACTGGAAGTCGAAGGCCTGCGCAT
CATCATCAAGAAGATGAAAGGCCCGAAAATCGTCCTGGCCAAGGTGCTGAAGCTGGACTGA

Upstream 100 bases:

>100_bases
GGCAATCCCGCTTCGAGCCGCTACATTGCCGGGTTCATAGCGTCCTCTCTGGCGTGACACGACCCTCTTCCTGTTAATAC
GGACCCTGCAAAACCCAATC

Downstream 100 bases:

>100_bases
CCCGATCAGCGGCGCCTGTTCAGCATCGGGCGCAGGGTGTTCTACCGGACGCCCATCGTTCCTCACGCTCCAGTGGGAAT
GCCTTGCGTGACGCTCCGCG

Product: CBS-domain containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MDPSPSFNLSSLFADFGMILFALFLVLLNGFFVAAEFAMVKLRSTKVEAIADKNGWRGHILRKVHGQLDAYLSACQLGIT
LASLGLGWVGEPAFAHLLEPLLAAMGVDTPELIKGVSFFTAFFIISYLHIVIGELAPKSWAIRKPELLSLWTAAPLYFFY
WLMYPAIYLLNASANAILRIAGQGEPGPHHEHSYSRDELKLILHSSRGQDPSDQGMRVLASAVEMGELEVVDWANSREDM
VSLDFNAPLKEILALFRRHKFSRYPLYDAERGEFVGLLHIKDLLLELAALDHIPESFNLAELTRPLERVSRHMPLSQLLE
QFRKGGAHFAVVEEADGKIVGYLTMEDVLEVLVGDIQDEHRKVERGILAYQPGKLLVRGDTPLFKIERLLGVDLDHIEAE
TLAGLIYDTLKRVPEEEEQLEVEGLRIIIKKMKGPKIVLAKVLKLD

Sequences:

>Translated_446_residues
MDPSPSFNLSSLFADFGMILFALFLVLLNGFFVAAEFAMVKLRSTKVEAIADKNGWRGHILRKVHGQLDAYLSACQLGIT
LASLGLGWVGEPAFAHLLEPLLAAMGVDTPELIKGVSFFTAFFIISYLHIVIGELAPKSWAIRKPELLSLWTAAPLYFFY
WLMYPAIYLLNASANAILRIAGQGEPGPHHEHSYSRDELKLILHSSRGQDPSDQGMRVLASAVEMGELEVVDWANSREDM
VSLDFNAPLKEILALFRRHKFSRYPLYDAERGEFVGLLHIKDLLLELAALDHIPESFNLAELTRPLERVSRHMPLSQLLE
QFRKGGAHFAVVEEADGKIVGYLTMEDVLEVLVGDIQDEHRKVERGILAYQPGKLLVRGDTPLFKIERLLGVDLDHIEAE
TLAGLIYDTLKRVPEEEEQLEVEGLRIIIKKMKGPKIVLAKVLKLD
>Mature_446_residues
MDPSPSFNLSSLFADFGMILFALFLVLLNGFFVAAEFAMVKLRSTKVEAIADKNGWRGHILRKVHGQLDAYLSACQLGIT
LASLGLGWVGEPAFAHLLEPLLAAMGVDTPELIKGVSFFTAFFIISYLHIVIGELAPKSWAIRKPELLSLWTAAPLYFFY
WLMYPAIYLLNASANAILRIAGQGEPGPHHEHSYSRDELKLILHSSRGQDPSDQGMRVLASAVEMGELEVVDWANSREDM
VSLDFNAPLKEILALFRRHKFSRYPLYDAERGEFVGLLHIKDLLLELAALDHIPESFNLAELTRPLERVSRHMPLSQLLE
QFRKGGAHFAVVEEADGKIVGYLTMEDVLEVLVGDIQDEHRKVERGILAYQPGKLLVRGDTPLFKIERLLGVDLDHIEAE
TLAGLIYDTLKRVPEEEEQLEVEGLRIIIKKMKGPKIVLAKVLKLD

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=380, Percent_Identity=36.3157894736842, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI40068055, Length=260, Percent_Identity=26.5384615384615, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI40068053, Length=260, Percent_Identity=26.5384615384615, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI1790664, Length=430, Percent_Identity=22.3255813953488, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87082033, Length=255, Percent_Identity=27.4509803921569, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693175, Length=389, Percent_Identity=22.6221079691517, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1786879, Length=262, Percent_Identity=24.4274809160305, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 50015; Mature: 50015

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPSPSFNLSSLFADFGMILFALFLVLLNGFFVAAEFAMVKLRSTKVEAIADKNGWRGHI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LRKVHGQLDAYLSACQLGITLASLGLGWVGEPAFAHLLEPLLAAMGVDTPELIKGVSFFT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AFFIISYLHIVIGELAPKSWAIRKPELLSLWTAAPLYFFYWLMYPAIYLLNASANAILRI
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
AGQGEPGPHHEHSYSRDELKLILHSSRGQDPSDQGMRVLASAVEMGELEVVDWANSREDM
ECCCCCCCCCCCCCCHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCE
VSLDFNAPLKEILALFRRHKFSRYPLYDAERGEFVGLLHIKDLLLELAALDHIPESFNLA
EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHH
ELTRPLERVSRHMPLSQLLEQFRKGGAHFAVVEEADGKIVGYLTMEDVLEVLVGDIQDEH
HHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHH
RKVERGILAYQPGKLLVRGDTPLFKIERLLGVDLDHIEAETLAGLIYDTLKRVPEEEEQL
HHHHCCCEEECCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
EVEGLRIIIKKMKGPKIVLAKVLKLD
HHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MDPSPSFNLSSLFADFGMILFALFLVLLNGFFVAAEFAMVKLRSTKVEAIADKNGWRGHI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LRKVHGQLDAYLSACQLGITLASLGLGWVGEPAFAHLLEPLLAAMGVDTPELIKGVSFFT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
AFFIISYLHIVIGELAPKSWAIRKPELLSLWTAAPLYFFYWLMYPAIYLLNASANAILRI
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
AGQGEPGPHHEHSYSRDELKLILHSSRGQDPSDQGMRVLASAVEMGELEVVDWANSREDM
ECCCCCCCCCCCCCCHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCE
VSLDFNAPLKEILALFRRHKFSRYPLYDAERGEFVGLLHIKDLLLELAALDHIPESFNLA
EEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCHH
ELTRPLERVSRHMPLSQLLEQFRKGGAHFAVVEEADGKIVGYLTMEDVLEVLVGDIQDEH
HHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHH
RKVERGILAYQPGKLLVRGDTPLFKIERLLGVDLDHIEAETLAGLIYDTLKRVPEEEEQL
HHHHCCCEEECCCCEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
EVEGLRIIIKKMKGPKIVLAKVLKLD
HHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]