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The map label for this gene is ydhC [H]

Identifier: 66048232

GI number: 66048232

Start: 5940336

End: 5941073

Strand: Direct

Name: ydhC [H]

Synonym: Psyr_5008

Alternate gene names: 66048232

Gene position: 5940336-5941073 (Clockwise)

Preceding gene: 66048231

Following gene: 66048233

Centisome position: 97.48

GC content: 58.81

Gene sequence:

>738_bases
ATGCGCAAATCAGATAGAGAAGCCTTTCTGGGCTCCGTACTGGGCAATGAGCAGCCTCCGGCGCACCTTGCCAGAACCGT
GATTGAAGAAAAGCTGCGAAACGCCATTATCGATGGCAGCCTGCCAAGCGGCACGGCATTGCGCCAACAGGAACTGGCGA
CGCTGTTTGGCGTCAGCCGCATGCCTGTGCGCGAAGCACTGCGCCAGCTCGAGGCGCAGTCGTTGCTGCGTGTCGAAACG
CACAAGGGCGCGGTGGTCGCGCCGCTGATCACCGAAGACGCAGTGGACGCCTATGCCCTGCGCATACTGCTGGAATCCGA
AGCGTTGCGTCTGTCTATCCCGTTGCTGGATGCCGACGATCTGGCGGCGGCCAAGGGCTACATCGAGCAGCTTGAAGTCG
AGACGGATTTCGGCCAGATCGGCAGACTCAATCGGATGTTCCACCTTTCGCTGTATGCCAAGAGCCACAACACGCGTCTC
ATGCGTCTGGTTGAAGAAGGCCTGAACGAAGAAGAACGCTTCCTGCGTTTCAATCTGTCCGATATGGGCCTGGGCAAGCT
TTCTCAGGATGACCATTGGCAACTGTTGCGGCTCGCCGAGCAGAAAGCGATCGAACCCTGTGTCGAAGCACTGCAGCATC
ACCTCAACCGAGGCGTTCAGGCTGTCACTCAATACCTGAACAGCAAAAAGGCCACCAAGGCCAAGCCGCCCCGCGCAGCG
AAGAAAAACCCCGCCTGA

Upstream 100 bases:

>100_bases
TTTGTATTTTCGCGACGGACTGGCAAGTCTTGGCTAGTCTGTCGGCAACAAAGCGATTAATTGGACATTGTCCAGCCAGG
GTTGATGAAGAAGTAGGCCA

Downstream 100 bases:

>100_bases
ATCATCAAGGCGGTCTATCCAGCAGGCGGTGACACAACGTCTGCGGATTGGCCGCTTGTACCTCCCGTCCTCCGCCTCAC
ACCTCGTCAGCGTATCGCCA

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MRKSDREAFLGSVLGNEQPPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET
HKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLAAAKGYIEQLEVETDFGQIGRLNRMFHLSLYAKSHNTRL
MRLVEEGLNEEERFLRFNLSDMGLGKLSQDDHWQLLRLAEQKAIEPCVEALQHHLNRGVQAVTQYLNSKKATKAKPPRAA
KKNPA

Sequences:

>Translated_245_residues
MRKSDREAFLGSVLGNEQPPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET
HKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLAAAKGYIEQLEVETDFGQIGRLNRMFHLSLYAKSHNTRL
MRLVEEGLNEEERFLRFNLSDMGLGKLSQDDHWQLLRLAEQKAIEPCVEALQHHLNRGVQAVTQYLNSKKATKAKPPRAA
KKNPA
>Mature_245_residues
MRKSDREAFLGSVLGNEQPPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET
HKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADDLAAAKGYIEQLEVETDFGQIGRLNRMFHLSLYAKSHNTRL
MRLVEEGLNEEERFLRFNLSDMGLGKLSQDDHWQLLRLAEQKAIEPCVEALQHHLNRGVQAVTQYLNSKKATKAKPPRAA
KKNPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27401; Mature: 27401

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSDREAFLGSVLGNEQPPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSR
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
MPVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADD
CCHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
LAAAKGYIEQLEVETDFGQIGRLNRMFHLSLYAKSHNTRLMRLVEEGLNEEERFLRFNLS
HHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEECCCCHHHHHHHHHCCCHHHHHHEECCC
DMGLGKLSQDDHWQLLRLAEQKAIEPCVEALQHHLNRGVQAVTQYLNSKKATKAKPPRAA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
KKNPA
CCCCC
>Mature Secondary Structure
MRKSDREAFLGSVLGNEQPPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSR
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
MPVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDAYALRILLESEALRLSIPLLDADD
CCHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHH
LAAAKGYIEQLEVETDFGQIGRLNRMFHLSLYAKSHNTRLMRLVEEGLNEEERFLRFNLS
HHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEEECCCCHHHHHHHHHCCCHHHHHHEECCC
DMGLGKLSQDDHWQLLRLAEQKAIEPCVEALQHHLNRGVQAVTQYLNSKKATKAKPPRAA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
KKNPA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]