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The map label for this gene is rhsB [H]

Identifier: 66048216

GI number: 66048216

Start: 5921771

End: 5923126

Strand: Direct

Name: rhsB [H]

Synonym: Psyr_4992

Alternate gene names: 66048216

Gene position: 5921771-5923126 (Clockwise)

Preceding gene: 66048215

Following gene: 66048217

Centisome position: 97.18

GC content: 53.76

Gene sequence:

>1356_bases
TTGTGCGCTTTCAACTGCTCAGGCATTTACGTCGAACACGCTTACAACCCGATTCACCGCCGCTACGAATACGACCCGGC
CGGTGAACTGAGCCGCACCCTCGACAAACTGCGCGGCGAAACCCAGTACGAATACGAAGCCAACGGCCAGCTGCTGGCGC
GCAACACCGGTCGAGTGGTCGACGGCGAAGAGTTCCGCTACGACGCCGCGGCCAACCGCCTGAACTTCAACACCAGCCGC
TTCGACCACGTCAAAGACAATCGCCTCAAACAGTGGGCGAACCACGAATACAAATACGACGCCTGGGGCAACCTGATAGA
GAAAACGGTCGGCATCGTGCGCTGGCAGACCTTCACCTACGACTGCGAAAACCGCTTGGTCAAAACCGAGACCATGGCCG
ACACGCAGGTGGAAAGCACCAGCAGCTACCAGTACGACAGCCTGGGCCGAAGAGTCGCCAAACAGTCCGAGATCAAAGGC
CAAACCGACCACAAACGCTTTCTCTGGCAAGGTCTGCGGATGCTGCGTGAGGAAAGTCCAGGACAGAGCAGCCTGTATAT
CTACGAGCCCGGCAGCTATGCGCCGCTGGCCCGCGTGGATGAAAAAGAAGGCGAGGTAGAGAACAAGGTTTATTACTTCC
ACACCGACCAGATCGGCACACCGCTGGAAATGACCGACGCCGAAGGGCAGATCGTCTGGCAGGCCAAATACAGGGCGTGG
GGCGCGGTGGAAAAGCTGGTGGTGAACGAGGTTGAGCAGAACCTGCGGTTTCAGGGGCAGTATTTTGATGCCGAGACAGG
GCTGCATTACAACACGTTTAGGTATTATGACCCAGAGATTGGGCGGTTTATTACGCAGGATCCGATTGGGTTGTTGGGTG
GGTTTAATCTATACGGCTATTGCCGTAACCCTACGGCTTGGATTGATCCGTTAGGGCTGGATTGGAACTATTTCCTTTCT
AACGAAGATGGTGCTTATTATCATGGTCGTGCTTCAGATAAAACGTCGTTGAGCGATGTTATGCGTCGTCACGGTAAAAA
TAAGGGTGTCGACGGCGCAAGATTTCGTGCTGGAGACACTATTACGCAGGTCACCCCGAAAGGAACAGATATTGATACTG
TTCGAGGCATTGAAAACGCAGGCGTAAGAGAGAAACCTATATTAGGTCGAGGAAGCCCAAAAGTCCGTGGGAACACTATT
CAAGGTATTTCTGATGCTAACCTTGACACTCCCAAGGGCATAGTCAGAACGAATGCGGCGAACAGTTATCTTGAGTCACA
TGGTGTGAACAAGGTTAGTTCGCTACCAAGCCTCGACAAACGGCCTCACGGCGGCGTTAAATCAGCAACCTGCTAA

Upstream 100 bases:

>100_bases
CCGAAGACGTGGTGACCCGCCACAGCAACATGCTACTGGGGAACCATAGTCGACCCAACGCTCAAGTCCAAATACCTGTG
GTGGAACAGCCTCGCTCAGG

Downstream 100 bases:

>100_bases
GGATTATTAATGAATAATAAACTAAATAAAGCTTTTAAAGATTATATGAGAAGTGGCTCATTAGACGAAATGAAGGACCC
TGAGTCAGCGAGGCTCATGC

Product: YD repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 451; Mature: 451

Protein sequence:

>451_residues
MCAFNCSGIYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRLNFNTSR
FDHVKDNRLKQWANHEYKYDAWGNLIEKTVGIVRWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKG
QTDHKRFLWQGLRMLREESPGQSSLYIYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAW
GAVEKLVVNEVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLGGFNLYGYCRNPTAWIDPLGLDWNYFLS
NEDGAYYHGRASDKTSLSDVMRRHGKNKGVDGARFRAGDTITQVTPKGTDIDTVRGIENAGVREKPILGRGSPKVRGNTI
QGISDANLDTPKGIVRTNAANSYLESHGVNKVSSLPSLDKRPHGGVKSATC

Sequences:

>Translated_451_residues
MCAFNCSGIYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRLNFNTSR
FDHVKDNRLKQWANHEYKYDAWGNLIEKTVGIVRWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKG
QTDHKRFLWQGLRMLREESPGQSSLYIYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAW
GAVEKLVVNEVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLGGFNLYGYCRNPTAWIDPLGLDWNYFLS
NEDGAYYHGRASDKTSLSDVMRRHGKNKGVDGARFRAGDTITQVTPKGTDIDTVRGIENAGVREKPILGRGSPKVRGNTI
QGISDANLDTPKGIVRTNAANSYLESHGVNKVSSLPSLDKRPHGGVKSATC
>Mature_451_residues
MCAFNCSGIYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRLNFNTSR
FDHVKDNRLKQWANHEYKYDAWGNLIEKTVGIVRWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKG
QTDHKRFLWQGLRMLREESPGQSSLYIYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAW
GAVEKLVVNEVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLGGFNLYGYCRNPTAWIDPLGLDWNYFLS
NEDGAYYHGRASDKTSLSDVMRRHGKNKGVDGARFRAGDTITQVTPKGTDIDTVRGIENAGVREKPILGRGSPKVRGNTI
QGISDANLDTPKGIVRTNAANSYLESHGVNKVSSLPSLDKRPHGGVKSATC

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI48994942, Length=106, Percent_Identity=50, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1786917, Length=107, Percent_Identity=47.6635514018692, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786706, Length=119, Percent_Identity=46.218487394958, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1790020, Length=107, Percent_Identity=46.7289719626168, Blast_Score=105, Evalue=6e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 51314; Mature: 51314

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCAFNCSGIYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVV
CCEECCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEE
DGEEFRYDAAANRLNFNTSRFDHVKDNRLKQWANHEYKYDAWGNLIEKTVGIVRWQTFTY
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHEEEEEEEEE
DCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGQTDHKRFLWQGLRMLREESP
ECCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
GQSSLYIYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAW
CCCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCEEEECCCCEEEEEECHHHH
GAVEKLVVNEVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLGGFNLYGY
HHHHHHHHHHHHHCCEECCEEECCCCCCEECEEEEECCHHHCCCCCCCHHHHCCCCEEEE
CRNPTAWIDPLGLDWNYFLSNEDGAYYHGRASDKTSLSDVMRRHGKNKGVDGARFRAGDT
ECCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCC
ITQVTPKGTDIDTVRGIENAGVREKPILGRGSPKVRGNTIQGISDANLDTPKGIVRTNAA
EEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCH
NSYLESHGVNKVSSLPSLDKRPHGGVKSATC
HHHHHHCCCCHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MCAFNCSGIYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVV
CCEECCCCEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEECCCCEE
DGEEFRYDAAANRLNFNTSRFDHVKDNRLKQWANHEYKYDAWGNLIEKTVGIVRWQTFTY
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHEEEEEEEEE
DCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGQTDHKRFLWQGLRMLREESP
ECCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
GQSSLYIYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAW
CCCEEEEECCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCEEEECCCCEEEEEECHHHH
GAVEKLVVNEVEQNLRFQGQYFDAETGLHYNTFRYYDPEIGRFITQDPIGLLGGFNLYGY
HHHHHHHHHHHHHCCEECCEEECCCCCCEECEEEEECCHHHCCCCCCCHHHHCCCCEEEE
CRNPTAWIDPLGLDWNYFLSNEDGAYYHGRASDKTSLSDVMRRHGKNKGVDGARFRAGDT
ECCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCHHHHHHHHHCCCCCCCCCCEEECCCC
ITQVTPKGTDIDTVRGIENAGVREKPILGRGSPKVRGNTIQGISDANLDTPKGIVRTNAA
EEEECCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEECCH
NSYLESHGVNKVSSLPSLDKRPHGGVKSATC
HHHHHHCCCCHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8041620; 9278503; 2644231; 2403547; 7934896 [H]