Click here to switch to the map view.

The map label for this gene is rhsB [H]

Identifier: 66048212

GI number: 66048212

Start: 5916253

End: 5917695

Strand: Direct

Name: rhsB [H]

Synonym: Psyr_4988

Alternate gene names: 66048212

Gene position: 5916253-5917695 (Clockwise)

Preceding gene: 66048211

Following gene: 66048213

Centisome position: 97.09

GC content: 54.54

Gene sequence:

>1443_bases
ATGTCTCTTGTTGTAGGCCAGCTGATCAGCGACATGGAGCGCGACGACCTGCACCGCGAGGTCTACCGCACCCAAGGCAA
GCTGACCAGTTGCTTCGGCTATGACAGCATGGGTCGCAAGGCCTGGCAGTATGCAACCACCCTGCCCGCGGAAAAGCTCT
CGCAGATCCAGAACCCGCTCATAAAGCCAGAGCGCTACGTCGAACACGCCTACAACCCGATTCACCGCCGTTATGAATAC
GACCCGGCCGGTGAACTGAGCCGCACCCTCGACAAACTGCGCGGCGAAACCCAGTACGAATACGAAGCCAACGGCCAGCT
GCTGGCGCGCAACACCGGTCGCGTGGTCGATGGCGAAGAGTTCCGCTACGACGCTGCGGCCAACCGCCTCAACTTCAACA
CCAGCCGATTCGATCACGTCAAAGACAACCGCCTCAGACAATGGGCGAACCACGAATACAAATACGACGCCTGGGGCAAC
CTGATAGAGAAAACGGTCGGCATCGTACGCTGGCAGACCTTCACCTACGACTGTGAAAACCGCCTGGTCAAAACCGAGAC
CATGGCTGACACGCAGGTGGAAAGCACCAGTAGCTACCAATACGATAGTTTGGGCAGGCGAGTCGCCAAACAGTCCGAGA
TCAAAGGCCATACCGGCCAAAAACGCTTCCTCTGGCAAGGCCTGCGGATGCTGCGTGAGGAAAGTCCGGGCCAGAGCAGC
CTGTACCTCTACGAGCCCGGCAGCTATGCGCCGCTGGCCCGTGTGGATGAAAAAGAAGGCGAGGTAGAGAACAAGGTTTA
CTACTTCCACACCGACCAGATCGGTACGCCGCTGGAGATGACCGACGCCGAAGGGCAGATCGTCTGGCAGGCCAAATACC
GGGCGTGGGGCGCGGTGGAAAAGGTGGTGGTGAACGAGGTTGAGCAGAACCTGCGGTTTCAGGGGCAGTATTTTGATGTC
GAGACGGGGCTGCATTACAACACGTTTCGGTATTATGACCCGGAGATTGGGCGGTTTATTACGCAGGATCCGATTGGGTT
GTTGGGTGGGGAAAATCTTTACAAATATGTACCAAACCCAACAACATGGGTAGATCCATGGGGATGGGAATGTTGGAGCA
CGGCTCGTAAAAACTACTGGAAAGCCGAAGCAAAGAATCCAACTCAAACATACTCACCAGCTAACATGGCGCGAATGACA
AAAGGTCAAGCGCCGAGAATGAAGGTTGAGGTTATAAATAGAAAAACCGGCAAACCTGAAATTAAAGACGTTTCTATGGA
ACTGCATCATAGAGATATACCTCAGCGAGTCGGAGGGGACGGAGTACATCAGGCAGGAAATCTTGATGCTTTAACTCCAT
GGGCCCACGAGTCAGTCGCATTTAGGCATACGGGATATAGGTTCGTAGATATGATTAAGGGGCTAGACACATGGGTCAAA
TGA

Upstream 100 bases:

>100_bases
TTTTAAAAACTTGGTGGTTTTACAGTTGAGCTCGGCTGCCGCTTCTTAAAGAACGAGGCCAGAAGCTTTAAGAAGCGGTG
TCTGAGCGAACCTGTGCTAC

Downstream 100 bases:

>100_bases
TAAGCTTGCAGGAGGTCCGGGATTGGGTCGAAGGAGAAACTTATTCGAGTCTTCTTTCTCACATCGCTCTTAAGCTAGGG
CTGGCCGTGAATGAGAAGAG

Product: YD repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MSLVVGQLISDMERDDLHREVYRTQGKLTSCFGYDSMGRKAWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPIHRRYEY
DPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGN
LIEKTVGIVRWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGHTGQKRFLWQGLRMLREESPGQSS
LYLYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAWGAVEKVVVNEVEQNLRFQGQYFDV
ETGLHYNTFRYYDPEIGRFITQDPIGLLGGENLYKYVPNPTTWVDPWGWECWSTARKNYWKAEAKNPTQTYSPANMARMT
KGQAPRMKVEVINRKTGKPEIKDVSMELHHRDIPQRVGGDGVHQAGNLDALTPWAHESVAFRHTGYRFVDMIKGLDTWVK

Sequences:

>Translated_480_residues
MSLVVGQLISDMERDDLHREVYRTQGKLTSCFGYDSMGRKAWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPIHRRYEY
DPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGN
LIEKTVGIVRWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGHTGQKRFLWQGLRMLREESPGQSS
LYLYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAWGAVEKVVVNEVEQNLRFQGQYFDV
ETGLHYNTFRYYDPEIGRFITQDPIGLLGGENLYKYVPNPTTWVDPWGWECWSTARKNYWKAEAKNPTQTYSPANMARMT
KGQAPRMKVEVINRKTGKPEIKDVSMELHHRDIPQRVGGDGVHQAGNLDALTPWAHESVAFRHTGYRFVDMIKGLDTWVK
>Mature_479_residues
SLVVGQLISDMERDDLHREVYRTQGKLTSCFGYDSMGRKAWQYATTLPAEKLSQIQNPLIKPERYVEHAYNPIHRRYEYD
PAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEEFRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNL
IEKTVGIVRWQTFTYDCENRLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGHTGQKRFLWQGLRMLREESPGQSSL
YLYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAWGAVEKVVVNEVEQNLRFQGQYFDVE
TGLHYNTFRYYDPEIGRFITQDPIGLLGGENLYKYVPNPTTWVDPWGWECWSTARKNYWKAEAKNPTQTYSPANMARMTK
GQAPRMKVEVINRKTGKPEIKDVSMELHHRDIPQRVGGDGVHQAGNLDALTPWAHESVAFRHTGYRFVDMIKGLDTWVK

Specific function: Rhs elements have a nonessential function. They may play an important role in the natural ecology of the cell [H]

COG id: COG3209

COG function: function code M; Rhs family protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RHS family [H]

Homologues:

Organism=Escherichia coli, GI48994942, Length=114, Percent_Identity=44.7368421052632, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1786917, Length=107, Percent_Identity=45.7943925233645, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1790020, Length=109, Percent_Identity=45.8715596330275, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1786706, Length=128, Percent_Identity=43.75, Blast_Score=102, Evalue=5e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001826
- InterPro:   IPR022385
- InterPro:   IPR006530 [H]

Pfam domain/function: PF03527 RHS; PF05593 RHS_repeat [H]

EC number: NA

Molecular weight: Translated: 55860; Mature: 55729

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVVGQLISDMERDDLHREVYRTQGKLTSCFGYDSMGRKAWQYATTLPAEKLSQIQNPL
CCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCC
IKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEE
CCHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEECCCCCEECCHH
FRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNLIEKTVGIVRWQTFTYDCEN
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHEEEEEEEEECCC
RLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGHTGQKRFLWQGLRMLREESPGQSS
CEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCE
LYLYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAWGAVE
EEEECCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEEEEECHHHHHHHH
KVVVNEVEQNLRFQGQYFDVETGLHYNTFRYYDPEIGRFITQDPIGLLGGENLYKYVPNP
HHHHHHHHHHHEECCEEEEEECCCEECCEEEECCHHHCCCCCCCCCCCCCCCCEEECCCC
TTWVDPWGWECWSTARKNYWKAEAKNPTQTYSPANMARMTKGQAPRMKVEVINRKTGKPE
CCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCC
IKDVSMELHHRDIPQRVGGDGVHQAGNLDALTPWAHESVAFRHTGYRFVDMIKGLDTWVK
HHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLVVGQLISDMERDDLHREVYRTQGKLTSCFGYDSMGRKAWQYATTLPAEKLSQIQNPL
CCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCHHHHHHHHCCC
IKPERYVEHAYNPIHRRYEYDPAGELSRTLDKLRGETQYEYEANGQLLARNTGRVVDGEE
CCHHHHHHHHHCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEECCCCCEECCHH
FRYDAAANRLNFNTSRFDHVKDNRLRQWANHEYKYDAWGNLIEKTVGIVRWQTFTYDCEN
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHHEEEEEEEEECCC
RLVKTETMADTQVESTSSYQYDSLGRRVAKQSEIKGHTGQKRFLWQGLRMLREESPGQSS
CEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCE
LYLYEPGSYAPLARVDEKEGEVENKVYYFHTDQIGTPLEMTDAEGQIVWQAKYRAWGAVE
EEEECCCCCCCHHHCCCCCCCCCCEEEEEECCCCCCCCEEECCCCEEEEEECHHHHHHHH
KVVVNEVEQNLRFQGQYFDVETGLHYNTFRYYDPEIGRFITQDPIGLLGGENLYKYVPNP
HHHHHHHHHHHEECCEEEEEECCCEECCEEEECCHHHCCCCCCCCCCCCCCCCEEECCCC
TTWVDPWGWECWSTARKNYWKAEAKNPTQTYSPANMARMTKGQAPRMKVEVINRKTGKPE
CCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCCCC
IKDVSMELHHRDIPQRVGGDGVHQAGNLDALTPWAHESVAFRHTGYRFVDMIKGLDTWVK
HHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8387990; 8041620; 9278503; 2644231; 2403547; 7934896 [H]