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The map label for this gene is 66048207

Identifier: 66048207

GI number: 66048207

Start: 5908301

End: 5910145

Strand: Direct

Name: 66048207

Synonym: Psyr_4983

Alternate gene names: NA

Gene position: 5908301-5910145 (Clockwise)

Preceding gene: 66048206

Following gene: 66048208

Centisome position: 96.96

GC content: 53.66

Gene sequence:

>1845_bases
ATGGATCTATCCTCACTGTTTACGGCGCAGAACAGACGACTGTTCAAGCTGACGATGGCCCTCAAGGGTGGCCAGGAGCT
GTTGCTTGATTCCTTTGCCGGTAGTGAAGGTTTATCGGCTGATTTCGGGTTTCAACTCGATCTGATTTCTGATGATGCGA
GCGTAAAGCTTAAGTCCGCTATAGGGCAGTCCGCGACCATCGAAATCGAACTCGCCACCGGAGGCAGCCGTTACATTAAC
GGTCATGTATTGAGCTTCGGTAACAATGGCAGCGACGGTGGCATGTCGCGCTATTCAGCCTACATAGGCTCGTGGTTGAG
CCTGATTGCGCAGAGGTACGATTCTCAGATCTATCAGGATCAGACAGTGGAGCAGGTGATCCGGAAGGTATTGGGTCGCT
ACGATGGGCTTGCGAAGTACGAGTTCCGTGTCAATCGCACGCTCAAGCCATACAGCTACATCACCCAATACCGCGAAAGC
GATAGTCACTTCGTCATGCGCCTGCTGGAGCAGGAGGGTTTGTTCTTCTACTTTGAGCATACGGCGGACAGCCATACGCT
GATCATCATGGACGACTCGACTGTACTCACACCGCTTCCAGAGCAGCCCCAGGTTCGCTTCCATACAGCTTCTGTAACCG
AAACCTCTGACTCCATCACCCACTGGAGTTCAGCCCGGGAATTCCAGGCTGGCAAGATTTCGGTACAAACCTTCGATTAC
AGGCAGCCAGGAAATCGTATTCCCGTCACGATGAACAGCCTTAATCAGCAAGGCGATGTTCCATCGTATGAAATCTTTGA
TTACATGGGGCAGTACACGCACGGCACGCCCGAAGATGGTGAGCTCCTCGTGCGTAATCGTATCGAGGCACTGGAGCTAA
AAGGTAAGACATTCGTAGGGTCGAGTAACTGTCGGGCGATGCGTCCAGGTTACACATTTGAACTGACGCAACATTACGAG
CATGACACGGGCTCTCCCGATGATCGGCAGTTCCTGTTAATGAATATCGAGCATCGCGGCAGCAATAATTACACCTCGGG
CAGTCAGGCGGGTTACGCCAATAAAATTTATTGCGTACGCAAAAAAATCAAGTTCCGGCCTCAGATGGATTTGCTCAAGC
CAGGCATCTCCGGCCCCCAAACCGCCATCGTCGTCGGCCCGCCCGGCGAAGAAATCTACACCGACGAAATGGGCCGGGTA
AAAGTGCAGTTCCACTGGGACCGCTACGGCAAGTTTGACGACAAAAGCTCCTGCTGGGTCCGCGTCGCTCAATCCGGCGC
AAGTGGCGGTTTTGGTAGCATGCAGATCCCGCGCGTCGGTGACGAGGTGGTGGTCGTTTTCCTGGATGGCAACCCTGACC
GTCCACTCGTCATGGGCAGTTTGTATAACAGCCAGAACACGCCGCCGTGGTCGCTGCCTGCCAACAAGACCCAGAGTGGT
TTCCTGACGCGTTCGGCCAAGGGGGATGGCGGTACGGCCAACTTCTTCCGCTTTGAAGATAAGGCCGGTGCCGAACAGGT
GATCATGCATGCCGAGCGCAACATGGACACAGAGATCGAGCTGGATGAAAAGCACGAGGTGGGCAATAACCGCAAGGTGA
CGGTCGGCGGCACGAATACGGAAATCATCCAGAAAGATACTGTGACGAACGTGCAGCAGGGGTCGTTTACGCTAAAGGTC
GACAACCAATTCATTCAGGTGGATGCCAAGCAGTACATCCTTCTCAAAGTGGGCGACAGCAGCATCTCGATCACTCCGGA
AGGCATTCAGATAAAAGGCAAAGTGATCAATGTTCTTGGCGAGAGCACCTTCGTCAAAGGTGACCGAGTCGACATCAACA
AGTGA

Upstream 100 bases:

>100_bases
TTCCCGGCGCAAGTCGCCGGGAGCCTGATTTTCGATGATAATTACGCGCGGGCTGATAAAGCCTCCTAGCGTTGTACCGG
CTTAAGGAGTAGTGGAAGCG

Downstream 100 bases:

>100_bases
GAACGCAGGGCATGGAACGAACAAGTCTCTACGACCGTATTTCCGCAAAACGTATTGCGGATGAGGAGGCAGCACGCAAG
GCGGCGCTGGAAGCTCCGGT

Product: Rhs element Vgr protein

Products: NA

Alternate protein names: Type VI Secretion System Vgr Family Protein; VgrG Protein; Rhs-Family Protein; Rhs Family Protein; Rhs Element Vgr Family Protein; Vgr-Related Protein; Rhs Accessory Genetic Element; RHS Accessory Genetic Element; VgrG Family T6SS G; VGR-Related Protein; Two Component LuxR Family Transcriptional Regulator; Conserved Hypothethical Protein; Rhs Element Vgr Family; VGR-Related Type VI Secretion System Protein; Rhs Element Vgr ProteinGp5-Like; Type VI Secretion System VgrG Family Protein; Rhs Element Vgr Protein Subfamily; Vgr Related Protein; Type VI Secretion System Effector Protein VgrS; VrgG Protein; Rhs/Vgr-Family Protein; Vgr Protein; Vgr Family Type VI Secretion System

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MDLSSLFTAQNRRLFKLTMALKGGQELLLDSFAGSEGLSADFGFQLDLISDDASVKLKSAIGQSATIEIELATGGSRYIN
GHVLSFGNNGSDGGMSRYSAYIGSWLSLIAQRYDSQIYQDQTVEQVIRKVLGRYDGLAKYEFRVNRTLKPYSYITQYRES
DSHFVMRLLEQEGLFFYFEHTADSHTLIIMDDSTVLTPLPEQPQVRFHTASVTETSDSITHWSSAREFQAGKISVQTFDY
RQPGNRIPVTMNSLNQQGDVPSYEIFDYMGQYTHGTPEDGELLVRNRIEALELKGKTFVGSSNCRAMRPGYTFELTQHYE
HDTGSPDDRQFLLMNIEHRGSNNYTSGSQAGYANKIYCVRKKIKFRPQMDLLKPGISGPQTAIVVGPPGEEIYTDEMGRV
KVQFHWDRYGKFDDKSSCWVRVAQSGASGGFGSMQIPRVGDEVVVVFLDGNPDRPLVMGSLYNSQNTPPWSLPANKTQSG
FLTRSAKGDGGTANFFRFEDKAGAEQVIMHAERNMDTEIELDEKHEVGNNRKVTVGGTNTEIIQKDTVTNVQQGSFTLKV
DNQFIQVDAKQYILLKVGDSSISITPEGIQIKGKVINVLGESTFVKGDRVDINK

Sequences:

>Translated_614_residues
MDLSSLFTAQNRRLFKLTMALKGGQELLLDSFAGSEGLSADFGFQLDLISDDASVKLKSAIGQSATIEIELATGGSRYIN
GHVLSFGNNGSDGGMSRYSAYIGSWLSLIAQRYDSQIYQDQTVEQVIRKVLGRYDGLAKYEFRVNRTLKPYSYITQYRES
DSHFVMRLLEQEGLFFYFEHTADSHTLIIMDDSTVLTPLPEQPQVRFHTASVTETSDSITHWSSAREFQAGKISVQTFDY
RQPGNRIPVTMNSLNQQGDVPSYEIFDYMGQYTHGTPEDGELLVRNRIEALELKGKTFVGSSNCRAMRPGYTFELTQHYE
HDTGSPDDRQFLLMNIEHRGSNNYTSGSQAGYANKIYCVRKKIKFRPQMDLLKPGISGPQTAIVVGPPGEEIYTDEMGRV
KVQFHWDRYGKFDDKSSCWVRVAQSGASGGFGSMQIPRVGDEVVVVFLDGNPDRPLVMGSLYNSQNTPPWSLPANKTQSG
FLTRSAKGDGGTANFFRFEDKAGAEQVIMHAERNMDTEIELDEKHEVGNNRKVTVGGTNTEIIQKDTVTNVQQGSFTLKV
DNQFIQVDAKQYILLKVGDSSISITPEGIQIKGKVINVLGESTFVKGDRVDINK
>Mature_614_residues
MDLSSLFTAQNRRLFKLTMALKGGQELLLDSFAGSEGLSADFGFQLDLISDDASVKLKSAIGQSATIEIELATGGSRYIN
GHVLSFGNNGSDGGMSRYSAYIGSWLSLIAQRYDSQIYQDQTVEQVIRKVLGRYDGLAKYEFRVNRTLKPYSYITQYRES
DSHFVMRLLEQEGLFFYFEHTADSHTLIIMDDSTVLTPLPEQPQVRFHTASVTETSDSITHWSSAREFQAGKISVQTFDY
RQPGNRIPVTMNSLNQQGDVPSYEIFDYMGQYTHGTPEDGELLVRNRIEALELKGKTFVGSSNCRAMRPGYTFELTQHYE
HDTGSPDDRQFLLMNIEHRGSNNYTSGSQAGYANKIYCVRKKIKFRPQMDLLKPGISGPQTAIVVGPPGEEIYTDEMGRV
KVQFHWDRYGKFDDKSSCWVRVAQSGASGGFGSMQIPRVGDEVVVVFLDGNPDRPLVMGSLYNSQNTPPWSLPANKTQSG
FLTRSAKGDGGTANFFRFEDKAGAEQVIMHAERNMDTEIELDEKHEVGNNRKVTVGGTNTEIIQKDTVTNVQQGSFTLKV
DNQFIQVDAKQYILLKVGDSSISITPEGIQIKGKVINVLGESTFVKGDRVDINK

Specific function: Unknown

COG id: COG3501

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68565; Mature: 68565

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSSLFTAQNRRLFKLTMALKGGQELLLDSFAGSEGLSADFGFQLDLISDDASVKLKSA
CCHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEHHH
IGQSATIEIELATGGSRYINGHVLSFGNNGSDGGMSRYSAYIGSWLSLIAQRYDSQIYQD
CCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QTVEQVIRKVLGRYDGLAKYEFRVNRTLKPYSYITQYRESDSHFVMRLLEQEGLFFYFEH
HHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEE
TADSHTLIIMDDSTVLTPLPEQPQVRFHTASVTETSDSITHWSSAREFQAGKISVQTFDY
CCCCEEEEEEECCEEECCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCEEEEEEEEC
RQPGNRIPVTMNSLNQQGDVPSYEIFDYMGQYTHGTPEDGELLVRNRIEALELKGKTFVG
CCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCEEEC
SSNCRAMRPGYTFELTQHYEHDTGSPDDRQFLLMNIEHRGSNNYTSGSQAGYANKIYCVR
CCCCCEECCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
KKIKFRPQMDLLKPGISGPQTAIVVGPPGEEIYTDEMGRVKVQFHWDRYGKFDDKSSCWV
EHHCCCCCHHHHCCCCCCCCEEEEECCCCCCEECCCCCEEEEEEEECCCCCCCCCCCEEE
RVAQSGASGGFGSMQIPRVGDEVVVVFLDGNPDRPLVMGSLYNSQNTPPWSLPANKTQSG
EEECCCCCCCCCCEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
FLTRSAKGDGGTANFFRFEDKAGAEQVIMHAERNMDTEIELDEKHEVGNNRKVTVGGTNT
EEEECCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECHHHCCCCCCEEEECCCCC
EIIQKDTVTNVQQGSFTLKVDNQFIQVDAKQYILLKVGDSSISITPEGIQIKGKVINVLG
EEEECCCCCCEECCEEEEEECCEEEEEECCEEEEEEECCCEEEECCCCEEEEEEEEEEEC
ESTFVKGDRVDINK
CCEEECCCEEECCC
>Mature Secondary Structure
MDLSSLFTAQNRRLFKLTMALKGGQELLLDSFAGSEGLSADFGFQLDLISDDASVKLKSA
CCHHHHHHHCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEHHH
IGQSATIEIELATGGSRYINGHVLSFGNNGSDGGMSRYSAYIGSWLSLIAQRYDSQIYQD
CCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QTVEQVIRKVLGRYDGLAKYEFRVNRTLKPYSYITQYRESDSHFVMRLLEQEGLFFYFEH
HHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHCCCEEEEEE
TADSHTLIIMDDSTVLTPLPEQPQVRFHTASVTETSDSITHWSSAREFQAGKISVQTFDY
CCCCEEEEEEECCEEECCCCCCCCEEEEEEECCCCCCCHHHCCCCCCCCCCEEEEEEEEC
RQPGNRIPVTMNSLNQQGDVPSYEIFDYMGQYTHGTPEDGELLVRNRIEALELKGKTFVG
CCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCEEEC
SSNCRAMRPGYTFELTQHYEHDTGSPDDRQFLLMNIEHRGSNNYTSGSQAGYANKIYCVR
CCCCCEECCCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEE
KKIKFRPQMDLLKPGISGPQTAIVVGPPGEEIYTDEMGRVKVQFHWDRYGKFDDKSSCWV
EHHCCCCCHHHHCCCCCCCCEEEEECCCCCCEECCCCCEEEEEEEECCCCCCCCCCCEEE
RVAQSGASGGFGSMQIPRVGDEVVVVFLDGNPDRPLVMGSLYNSQNTPPWSLPANKTQSG
EEECCCCCCCCCCEECCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
FLTRSAKGDGGTANFFRFEDKAGAEQVIMHAERNMDTEIELDEKHEVGNNRKVTVGGTNT
EEEECCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCCEEEECHHHCCCCCCEEEECCCCC
EIIQKDTVTNVQQGSFTLKVDNQFIQVDAKQYILLKVGDSSISITPEGIQIKGKVINVLG
EEEECCCCCCEECCEEEEEECCEEEEEECCEEEEEEECCCEEEECCCCEEEEEEEEEEEC
ESTFVKGDRVDINK
CCEEECCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA