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The map label for this gene is bdlA [H]

Identifier: 66048131

GI number: 66048131

Start: 5819521

End: 5820867

Strand: Direct

Name: bdlA [H]

Synonym: Psyr_4907

Alternate gene names: 66048131

Gene position: 5819521-5820867 (Clockwise)

Preceding gene: 66048130

Following gene: 66048132

Centisome position: 95.5

GC content: 59.54

Gene sequence:

>1347_bases
ATGTTCGGAAATAAGAACAAAGCTGAGCTGACGGCCATGAAGGCCCAGGTAGATGGACTCAAAGGACTGACAAGCGCGCT
GGAAAAATCGATGGCGGTGGTCGAGCTGGGTCTCGACGGCAAGATCCTCCGGGCCAACGATAACTTCCTCGCGGCGATGG
GCTATCGGGCTGAAGAGCTGGCGACCAAGACACATCGCGACTTCTGCGAGCCGGAAATGCTCCGCAGCCGCGAGTATGCG
GATCTCTGGGCATCCTTGAAGGCCGGAAAATTCATCTCGGGCACCTTCAAACGCGTCGGCAAGAATGGCCACAGCGTCTG
GCTCGAAGCCAGCTACAACCCGGTGACGGATGCGCAGGGCAACGTCGTCAAGGTGGTCAAGTACGCCCTGGACGTCACCA
CACGCGTGATGCTGGAGAACGAAACCAGCAGCAAGCTCGCCGCTGTCGACCGGGCGATGGCTATCTGCGAATTCGAACCC
AACGGCAATGTGATAACCGCCAACAACAACTTCCTGAACGTCATGGGCTATGCGCTGGCCGAGATCAAGGGTAAACACCA
TCGCTCGTTCTGCGAGCCGACACTGGTCAACAGCCCGGAATACACCGAGTTCTGGCGCAAGCTGAACCACGGCGAGTTCA
TCGGCGACCAGTTCAAACGTATCGGCAAACAGGGTCGGGTTGTCTGGCTGGAAGCGACGTATAACCCGGTTTTCGATGTC
GACGGCAAACTCTACAAAATCGTCAAGTTCGCCAGCGACATTACCCAGCGCGTCGAAAAACAGGAAGCTGACGCGCACGG
TGCGTCGCGCGCTTATCACATCTCGGCAGAAACCGAGAAAGTGGCCGAGCAGGGAACCCTGGTCATTCAGGAAACCGCGC
GGGAAATGCGTCAGATCTCCGAAAACATCGGCGCATCGGCAAAGCTGGTGAGTCAACTGGGTGATCGCTCCGAGCAGATC
ACCGCCATCGTCAACACCATTCGCGGCATCGCCGATCAGACCAACCTGCTGGCGCTCAACGCGGCCATCGAGGCGGCACG
CGCGGGGGATCAGGGCCGTGGGTTTGCCGTGGTGGCCGACGAAGTCAGGCAACTGGCGGGACGTACCAGCGGCTCGACCA
CCGAGATTGCCGAAATGATCGGCAAGATCCTCGCCGAAACACGCGAAGCCGTGGCGAGCATGGACGCCACGCAGGAAGGA
GCCATTCGTGGTGTGACACTGGCCGATCAGGCCGGCCAGGTGATCGTGCAGATCCGCGATGGCGCAAGCGATGCAGTCGA
GGCCGTCAACATGTTCGCCACACGCATGGACGAAGCTGAAGCGTTTGCAAAACCGGGCAAGCGGTGA

Upstream 100 bases:

>100_bases
GATTTATTTATAGGATTATTGCACTCATGCATTAACGCCACAGGTTCTGGTGTCGATAGCCTCATCACAGTAAGTCCGCA
AACACACCTAGGGGCACGTT

Downstream 100 bases:

>100_bases
CGCTTCGGTAGCACCGCGCCAATCAAGAACCCGCGCGCTGCGGGTTTTTTATTGACCACTGATTACTGCACAAACCTTGG
TTATCAGGCCCGTCTGCGCT

Product: PAS

Products: NA

Alternate protein names: Chemotaxis regulator BdlA [H]

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MFGNKNKAELTAMKAQVDGLKGLTSALEKSMAVVELGLDGKILRANDNFLAAMGYRAEELATKTHRDFCEPEMLRSREYA
DLWASLKAGKFISGTFKRVGKNGHSVWLEASYNPVTDAQGNVVKVVKYALDVTTRVMLENETSSKLAAVDRAMAICEFEP
NGNVITANNNFLNVMGYALAEIKGKHHRSFCEPTLVNSPEYTEFWRKLNHGEFIGDQFKRIGKQGRVVWLEATYNPVFDV
DGKLYKIVKFASDITQRVEKQEADAHGASRAYHISAETEKVAEQGTLVIQETAREMRQISENIGASAKLVSQLGDRSEQI
TAIVNTIRGIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAGRTSGSTTEIAEMIGKILAETREAVASMDATQEG
AIRGVTLADQAGQVIVQIRDGASDAVEAVNMFATRMDEAEAFAKPGKR

Sequences:

>Translated_448_residues
MFGNKNKAELTAMKAQVDGLKGLTSALEKSMAVVELGLDGKILRANDNFLAAMGYRAEELATKTHRDFCEPEMLRSREYA
DLWASLKAGKFISGTFKRVGKNGHSVWLEASYNPVTDAQGNVVKVVKYALDVTTRVMLENETSSKLAAVDRAMAICEFEP
NGNVITANNNFLNVMGYALAEIKGKHHRSFCEPTLVNSPEYTEFWRKLNHGEFIGDQFKRIGKQGRVVWLEATYNPVFDV
DGKLYKIVKFASDITQRVEKQEADAHGASRAYHISAETEKVAEQGTLVIQETAREMRQISENIGASAKLVSQLGDRSEQI
TAIVNTIRGIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAGRTSGSTTEIAEMIGKILAETREAVASMDATQEG
AIRGVTLADQAGQVIVQIRDGASDAVEAVNMFATRMDEAEAFAKPGKR
>Mature_448_residues
MFGNKNKAELTAMKAQVDGLKGLTSALEKSMAVVELGLDGKILRANDNFLAAMGYRAEELATKTHRDFCEPEMLRSREYA
DLWASLKAGKFISGTFKRVGKNGHSVWLEASYNPVTDAQGNVVKVVKYALDVTTRVMLENETSSKLAAVDRAMAICEFEP
NGNVITANNNFLNVMGYALAEIKGKHHRSFCEPTLVNSPEYTEFWRKLNHGEFIGDQFKRIGKQGRVVWLEATYNPVFDV
DGKLYKIVKFASDITQRVEKQEADAHGASRAYHISAETEKVAEQGTLVIQETAREMRQISENIGASAKLVSQLGDRSEQI
TAIVNTIRGIADQTNLLALNAAIEAARAGDQGRGFAVVADEVRQLAGRTSGSTTEIAEMIGKILAETREAVASMDATQEG
AIRGVTLADQAGQVIVQIRDGASDAVEAVNMFATRMDEAEAFAKPGKR

Specific function: Essential for biofilm dispersion by sensing environmental cues. May be involved in sensing and transducing signals within cells, resulting in the modulation of c-di-GMP levels, swimming motility and adhesiveness of the bacterial cell surface [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI2367378, Length=175, Percent_Identity=35.4285714285714, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788195, Length=202, Percent_Identity=33.1683168316832, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788194, Length=151, Percent_Identity=37.7483443708609, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI1789453, Length=141, Percent_Identity=37.5886524822695, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787690, Length=228, Percent_Identity=31.5789473684211, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00015 MCPsignal; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 48903; Mature: 48903

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: PS50113 PAC ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFGNKNKAELTAMKAQVDGLKGLTSALEKSMAVVELGLDGKILRANDNFLAAMGYRAEEL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCEEEECCCCHHHH
ATKTHRDFCEPEMLRSREYADLWASLKAGKFISGTFKRVGKNGHSVWLEASYNPVTDAQG
HHHHHHHCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
NVVKVVKYALDVTTRVMLENETSSKLAAVDRAMAICEFEPNGNVITANNNFLNVMGYALA
CHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHEEEEECCCCCEEEECCCCHHHHHHHHH
EIKGKHHRSFCEPTLVNSPEYTEFWRKLNHGEFIGDQFKRIGKQGRVVWLEATYNPVFDV
HHCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCC
DGKLYKIVKFASDITQRVEKQEADAHGASRAYHISAETEKVAEQGTLVIQETAREMRQIS
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHCCCEEHHHHHHHHHHHH
ENIGASAKLVSQLGDRSEQITAIVNTIRGIADQTNLLALNAAIEAARAGDQGRGFAVVAD
HHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCEEEEHH
EVRQLAGRTSGSTTEIAEMIGKILAETREAVASMDATQEGAIRGVTLADQAGQVIVQIRD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEC
GASDAVEAVNMFATRMDEAEAFAKPGKR
CCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFGNKNKAELTAMKAQVDGLKGLTSALEKSMAVVELGLDGKILRANDNFLAAMGYRAEEL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCEEEECCCCHHHH
ATKTHRDFCEPEMLRSREYADLWASLKAGKFISGTFKRVGKNGHSVWLEASYNPVTDAQG
HHHHHHHCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
NVVKVVKYALDVTTRVMLENETSSKLAAVDRAMAICEFEPNGNVITANNNFLNVMGYALA
CHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHEEEEECCCCCEEEECCCCHHHHHHHHH
EIKGKHHRSFCEPTLVNSPEYTEFWRKLNHGEFIGDQFKRIGKQGRVVWLEATYNPVFDV
HHCCCHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCC
DGKLYKIVKFASDITQRVEKQEADAHGASRAYHISAETEKVAEQGTLVIQETAREMRQIS
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHCCCEEHHHHHHHHHHHH
ENIGASAKLVSQLGDRSEQITAIVNTIRGIADQTNLLALNAAIEAARAGDQGRGFAVVAD
HHCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCEEEEHH
EVRQLAGRTSGSTTEIAEMIGKILAETREAVASMDATQEGAIRGVTLADQAGQVIVQIRD
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEEEEEEC
GASDAVEAVNMFATRMDEAEAFAKPGKR
CCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]