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The map label for this gene is ygbI [C]

Identifier: 66048038

GI number: 66048038

Start: 5709439

End: 5710263

Strand: Direct

Name: ygbI [C]

Synonym: Psyr_4814

Alternate gene names: 66048038

Gene position: 5709439-5710263 (Clockwise)

Preceding gene: 66048037

Following gene: 66048041

Centisome position: 93.69

GC content: 63.03

Gene sequence:

>825_bases
ATGTCCACTGAAGAGGAGATCGCCATTTCCGGCGGTACACCTATGATCCCTGATCAGCGCCGGGAGCTGATGCTGCGTCA
GTTACGCAAGCATCAGGTGCTCAGCGTGCATCAGTTGATGGAGATGTTCGATTGCTCGCACATGACCATCCGCCGCGACA
TTGCCCTGCTGGAGCAGGAAGGTCGCGCCTACTCGGTCACCGGCGGCGTGCGTATCGCCAGCCAGGTCCACAGCGAACCC
AGCCACCAGTCCAAGGCGGTGGTGGAATTGCCGCACAAGCAGGGCATGGCGCGGCTCGCAGCGGGGTTGTTGCACCCGGA
CATGACGATCTATCTGGACGCAGGCACCAGCACACTCGAAATCGTCCCGCACATCATCGCGCTGTCGGGCATGACCGTGG
TCACCAATGATTTCGGCGTGGTCAACGCGCTGGCCGATGCTGCGCATGTGGATGTGATTCATACCGGCGGGCTGCTCGAT
CATCCGAATCGTTCCAGCGTCGGCGGCCTGGCAGCGGCAACCTTGCGCCAGCTGGCGACCGATGTGGCCTTCATGTCCAC
CAGCTCGTGGGACCTGCAACGCGGCACCACCACACCGTCGGCGCTGAAGGTCGAGGTCAAGCAGGCCGCCATGCAGTCCG
CCTCGCAAACCGTGCTGATCGCCACCAGCTCCAAGTACGGCACCTTCGGTATGTACAAGGTCGCCGGGCTCGAGCAGTTC
GACACCATCATCACCGACGCAGCCCTGGCCGAAGCGGCTGCCGACGGGATTCGCAAGCAGCGTATCGAGTTGCTGCTGGC
GCCAGTGGGCGGCCGTTCGAAGTAG

Upstream 100 bases:

>100_bases
GCGCAAAAAAGCCTGCGACCGCTTCCATTGCCGAAGCGATTGGCTAAGATGCGCGGACCGTCTGCTGCCTGAGCCGGCTC
ATTGATGTACAGGAGTACGA

Downstream 100 bases:

>100_bases
CTTGTCGCCAGGCGAGCTGTGCCACAGGCCACGAATGGCAGGCATAAAAAAACCCGGTCTCGCGACCGGGTTTTTTGTGT
CTAGCCGACTAACCGATTAC

Product: regulatory protein, DeoR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 274; Mature: 273

Protein sequence:

>274_residues
MSTEEEIAISGGTPMIPDQRRELMLRQLRKHQVLSVHQLMEMFDCSHMTIRRDIALLEQEGRAYSVTGGVRIASQVHSEP
SHQSKAVVELPHKQGMARLAAGLLHPDMTIYLDAGTSTLEIVPHIIALSGMTVVTNDFGVVNALADAAHVDVIHTGGLLD
HPNRSSVGGLAAATLRQLATDVAFMSTSSWDLQRGTTTPSALKVEVKQAAMQSASQTVLIATSSKYGTFGMYKVAGLEQF
DTIITDAALAEAAADGIRKQRIELLLAPVGGRSK

Sequences:

>Translated_274_residues
MSTEEEIAISGGTPMIPDQRRELMLRQLRKHQVLSVHQLMEMFDCSHMTIRRDIALLEQEGRAYSVTGGVRIASQVHSEP
SHQSKAVVELPHKQGMARLAAGLLHPDMTIYLDAGTSTLEIVPHIIALSGMTVVTNDFGVVNALADAAHVDVIHTGGLLD
HPNRSSVGGLAAATLRQLATDVAFMSTSSWDLQRGTTTPSALKVEVKQAAMQSASQTVLIATSSKYGTFGMYKVAGLEQF
DTIITDAALAEAAADGIRKQRIELLLAPVGGRSK
>Mature_273_residues
STEEEIAISGGTPMIPDQRRELMLRQLRKHQVLSVHQLMEMFDCSHMTIRRDIALLEQEGRAYSVTGGVRIASQVHSEPS
HQSKAVVELPHKQGMARLAAGLLHPDMTIYLDAGTSTLEIVPHIIALSGMTVVTNDFGVVNALADAAHVDVIHTGGLLDH
PNRSSVGGLAAATLRQLATDVAFMSTSSWDLQRGTTTPSALKVEVKQAAMQSASQTVLIATSSKYGTFGMYKVAGLEQFD
TIITDAALAEAAADGIRKQRIELLLAPVGGRSK

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI226510968, Length=253, Percent_Identity=43.4782608695652, Blast_Score=210, Evalue=7e-56,
Organism=Escherichia coli, GI1789519, Length=250, Percent_Identity=29.2, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789059, Length=253, Percent_Identity=31.2252964426877, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1790753, Length=258, Percent_Identity=28.2945736434109, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1787063, Length=245, Percent_Identity=27.7551020408163, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1788069, Length=216, Percent_Identity=25.9259259259259, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1789829, Length=233, Percent_Identity=26.6094420600858, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787540, Length=233, Percent_Identity=24.0343347639485, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789170, Length=230, Percent_Identity=23.4782608695652, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082344, Length=254, Percent_Identity=21.259842519685, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 29405; Mature: 29274

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEEEIAISGGTPMIPDQRRELMLRQLRKHQVLSVHQLMEMFDCSHMTIRRDIALLEQE
CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
GRAYSVTGGVRIASQVHSEPSHQSKAVVELPHKQGMARLAAGLLHPDMTIYLDAGTSTLE
CCEEEECCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCHHH
IVPHIIALSGMTVVTNDFGVVNALADAAHVDVIHTGGLLDHPNRSSVGGLAAATLRQLAT
HHHHHHHHCCCEEEECCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
DVAFMSTSSWDLQRGTTTPSALKVEVKQAAMQSASQTVLIATSSKYGTFGMYKVAGLEQF
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCHHHH
DTIITDAALAEAAADGIRKQRIELLLAPVGGRSK
HHHHHHHHHHHHHHHHHHHHEEHEEEECCCCCCC
>Mature Secondary Structure 
STEEEIAISGGTPMIPDQRRELMLRQLRKHQVLSVHQLMEMFDCSHMTIRRDIALLEQE
CCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
GRAYSVTGGVRIASQVHSEPSHQSKAVVELPHKQGMARLAAGLLHPDMTIYLDAGTSTLE
CCEEEECCCCHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCHHH
IVPHIIALSGMTVVTNDFGVVNALADAAHVDVIHTGGLLDHPNRSSVGGLAAATLRQLAT
HHHHHHHHCCCEEEECCCHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
DVAFMSTSSWDLQRGTTTPSALKVEVKQAAMQSASQTVLIATSSKYGTFGMYKVAGLEQF
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEECCHHHH
DTIITDAALAEAAADGIRKQRIELLLAPVGGRSK
HHHHHHHHHHHHHHHHHHHHEEHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]