| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is chiD [H]
Identifier: 66048001
GI number: 66048001
Start: 5655560
End: 5657971
Strand: Direct
Name: chiD [H]
Synonym: Psyr_4777
Alternate gene names: 66048001
Gene position: 5655560-5657971 (Clockwise)
Preceding gene: 66048000
Following gene: 66048002
Centisome position: 92.81
GC content: 55.97
Gene sequence:
>2412_bases ATGCTCAACCCAAAAATCATCACTCAATACAAAAACAAGAAGGTCGACGCCGCATCGACCATGACGGATATATCAGGGAA AAATATCCTCATGGGCTTCTGGCATAACTGGCCCTCGGAATCAGGTCAGGGCTACCAGCAGGGAATGTTTGCCGAAATGC CGCTGACAGGCATAGATAAGGCCTACAACGTCATTGCAGTGGCTTTCATGAAAGGCGCCGGCATACCGACCTTCAAGCCT TATAACCTGAGTGATGAGGCGTTTCGCGCTCAGGTAGCGGAACTGAATGCCCAGGGCCGGGCGGTGCTGATCTCGCTTGG CGGGGCTGATGCGCATATCGAGCTGCATGCCGGCCAGGAAGAAGCGCTGGCCTACGAGATTATCCGGCTGGTCGAAGTCT ATGGCTTTGACGGCCTGGATATCGATCTCGAACAGGCCGCCATTACCTTTGCCGATAACCGCACCGTATTACCCGCCGCA CTGAGAATGGTGCGCGAGCATTACGAGACCGAAGGCAAGCATTTCATTATCAGCATGGCTCCGGAGTTTCCTTATCTGCG ATCGGCTGCCCGCGATACGCCACTGCTGAAAGAAATCACCACCTACTTTCCGTTTCTGAAAGAAGCCGTCGCCTTCCTCA CGTCCTTCAGAAGTGGCGGCGCGTACCTCGCTTATATCGAGGCGCTTGAGGACCTCTATGACTTTATCGCCCCCCAATAC TACAACCAGGGTGGCGACGGCATATGGGTCGACGAGCTCAACCTGTGGGTGACGCAAAACAATGATGCCCACAAGAAGGA ATTTCTCTATTACCTGACCGACAGCCTGATCCACGGCACGCGCGGCTTTACCAAAATCCCGGCGAACCGGCTTGCGATCG GCTTGCCCACCAATAATGACGCCGCCGCGACAGGTTATGTGATCAACCCGGACGACGTGAAATACGCCCTGGACACCCTG CAGGCCGACGGCAACCCGATTCGCGGTCTGATGACCTGGTCGGTCAACTGGGACAATGGCACGCCCAAGGTTGGCGAAGC CTATAAATGGGAGTTTGCCAAACGCTACGGTTATCTCACCGGCGGCGAAACGCCCGTACCTGACAAGCCTTCAGTACCCA CTGGCCTCAGGTCAACCGAACAAACCCCAACGTCGGTGAAACTCGTCTGGTCGCTGTCGGCAGGCCAGAACCCGGTACTG CGCTATGAACTGCGCCGCGACAACAGCGTGTCGTTATTTGCGGACAGCCCTTCGTATGAAGACACCGGCCTTCAGTCCGG TATCACTTACAGTTACCAGGTACGTGCCATTGATGTCATGGGCAACACCTCGGCATTCTCTCCAGCGATCAGCGTGAGTA CCCAGGCAGGAGGCGGCGGTGCGGCGAACCCGACACCACCAGTCTTGAGCCTGGCAGGCGTCACCGATAGAAGTGTATCG CTGGAATGGACACAGTCCAGCAGCGAAGCTGGACTCCTCGAATATCAAATTGCCCGGGATGGCTGGCCTTTTGTGAAGGT CCCTGCTGACCAACCACGCGTCTATACCGATGAGAACCTCACAGCGGGCAGAACGTATACCTACTTCGTTATTGCAAAAG ATATACAGGGTAAGTGGTCGGAGATCAGCAACGAGCTGGAAGTCCCAACCGATCTGGAACCCTATAGACCTTCAGTGCCT GTCGACTTCAGGTCAACCGGGCGGACCACCACATCGATAACGCTGGACTGGAGTGTTTCGACGGATGCCAGCGGTCCGTT TGACTATGAGCTGTTCCGCGAGGGTGTTTCGATAGGCAAGGGCAAGGTTCCTCCCTTCACCGACGAAGGCCTTCTGCAAA GCCGCCTTTATGGTTATCACATCATCGCGACCGACAGTCTGGGCAACAGCTCAGGACTCTCTGAAGAACTTCTGGCCACT ACAGAATCCGAGGCGTCCAATGATCGACCTGCGCCACCCGGCAACTTGCGTCAGACAGGTGCGACCCCCACCAGTGTTTC ACTGGCATGGGATGCACCTACCGGGGGTACTGCCGTTGACGTCTACCATATCTACAGTTTCGACGCGCCTACTGTGACCG TCGACTCAACCGTACTGACTTATACCGTCAGAGGCCTGACCCCAAGCAAGACCTATCAGTATCTGGTCGGCGCACGCGAT AAAGATTCAGAACTGTCCGGGCCCAGCAACATTGTGCATGCCTCGACCAGCGCCGCATTGCCTGAATGGAAAACAAATAC TGACTACGTGAAGGGGGATAAGGTGATGTATGCCGGTGCCTCTTACATCTGCCTCAATCCTCACCATTCACAAACAGACT GGTACCCAGGCGGTGCGCCGACGCTATGGGCACCCTGGACCGAGCAAGCAGGCGGCAGAGGTTTTCGCGACTGGCCGAAA GAATGGCAGTGA
Upstream 100 bases:
>100_bases AAAGCCTTCCCGCCGATACCGTCATTTCTGACAGTTACGTGAAAAAACCTTTCGTGATCAACTCCCGTTGCAGTCAATCC AACGGACGGAGACACGAATC
Downstream 100 bases:
>100_bases ACCTCGCGAGTACCTGCCCTGGCTCATAAACAGACGGTGACGGTGTAATGACTGAACGACTTATCCACAGCGCCCAAAAA GCGTTTATGGATAAGTCGTT
Product: glycoside hydrolase family 18 protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 803; Mature: 803
Protein sequence:
>803_residues MLNPKIITQYKNKKVDAASTMTDISGKNILMGFWHNWPSESGQGYQQGMFAEMPLTGIDKAYNVIAVAFMKGAGIPTFKP YNLSDEAFRAQVAELNAQGRAVLISLGGADAHIELHAGQEEALAYEIIRLVEVYGFDGLDIDLEQAAITFADNRTVLPAA LRMVREHYETEGKHFIISMAPEFPYLRSAARDTPLLKEITTYFPFLKEAVAFLTSFRSGGAYLAYIEALEDLYDFIAPQY YNQGGDGIWVDELNLWVTQNNDAHKKEFLYYLTDSLIHGTRGFTKIPANRLAIGLPTNNDAAATGYVINPDDVKYALDTL QADGNPIRGLMTWSVNWDNGTPKVGEAYKWEFAKRYGYLTGGETPVPDKPSVPTGLRSTEQTPTSVKLVWSLSAGQNPVL RYELRRDNSVSLFADSPSYEDTGLQSGITYSYQVRAIDVMGNTSAFSPAISVSTQAGGGGAANPTPPVLSLAGVTDRSVS LEWTQSSSEAGLLEYQIARDGWPFVKVPADQPRVYTDENLTAGRTYTYFVIAKDIQGKWSEISNELEVPTDLEPYRPSVP VDFRSTGRTTTSITLDWSVSTDASGPFDYELFREGVSIGKGKVPPFTDEGLLQSRLYGYHIIATDSLGNSSGLSEELLAT TESEASNDRPAPPGNLRQTGATPTSVSLAWDAPTGGTAVDVYHIYSFDAPTVTVDSTVLTYTVRGLTPSKTYQYLVGARD KDSELSGPSNIVHASTSAALPEWKTNTDYVKGDKVMYAGASYICLNPHHSQTDWYPGGAPTLWAPWTEQAGGRGFRDWPK EWQ
Sequences:
>Translated_803_residues MLNPKIITQYKNKKVDAASTMTDISGKNILMGFWHNWPSESGQGYQQGMFAEMPLTGIDKAYNVIAVAFMKGAGIPTFKP YNLSDEAFRAQVAELNAQGRAVLISLGGADAHIELHAGQEEALAYEIIRLVEVYGFDGLDIDLEQAAITFADNRTVLPAA LRMVREHYETEGKHFIISMAPEFPYLRSAARDTPLLKEITTYFPFLKEAVAFLTSFRSGGAYLAYIEALEDLYDFIAPQY YNQGGDGIWVDELNLWVTQNNDAHKKEFLYYLTDSLIHGTRGFTKIPANRLAIGLPTNNDAAATGYVINPDDVKYALDTL QADGNPIRGLMTWSVNWDNGTPKVGEAYKWEFAKRYGYLTGGETPVPDKPSVPTGLRSTEQTPTSVKLVWSLSAGQNPVL RYELRRDNSVSLFADSPSYEDTGLQSGITYSYQVRAIDVMGNTSAFSPAISVSTQAGGGGAANPTPPVLSLAGVTDRSVS LEWTQSSSEAGLLEYQIARDGWPFVKVPADQPRVYTDENLTAGRTYTYFVIAKDIQGKWSEISNELEVPTDLEPYRPSVP VDFRSTGRTTTSITLDWSVSTDASGPFDYELFREGVSIGKGKVPPFTDEGLLQSRLYGYHIIATDSLGNSSGLSEELLAT TESEASNDRPAPPGNLRQTGATPTSVSLAWDAPTGGTAVDVYHIYSFDAPTVTVDSTVLTYTVRGLTPSKTYQYLVGARD KDSELSGPSNIVHASTSAALPEWKTNTDYVKGDKVMYAGASYICLNPHHSQTDWYPGGAPTLWAPWTEQAGGRGFRDWPK EWQ >Mature_803_residues MLNPKIITQYKNKKVDAASTMTDISGKNILMGFWHNWPSESGQGYQQGMFAEMPLTGIDKAYNVIAVAFMKGAGIPTFKP YNLSDEAFRAQVAELNAQGRAVLISLGGADAHIELHAGQEEALAYEIIRLVEVYGFDGLDIDLEQAAITFADNRTVLPAA LRMVREHYETEGKHFIISMAPEFPYLRSAARDTPLLKEITTYFPFLKEAVAFLTSFRSGGAYLAYIEALEDLYDFIAPQY YNQGGDGIWVDELNLWVTQNNDAHKKEFLYYLTDSLIHGTRGFTKIPANRLAIGLPTNNDAAATGYVINPDDVKYALDTL QADGNPIRGLMTWSVNWDNGTPKVGEAYKWEFAKRYGYLTGGETPVPDKPSVPTGLRSTEQTPTSVKLVWSLSAGQNPVL RYELRRDNSVSLFADSPSYEDTGLQSGITYSYQVRAIDVMGNTSAFSPAISVSTQAGGGGAANPTPPVLSLAGVTDRSVS LEWTQSSSEAGLLEYQIARDGWPFVKVPADQPRVYTDENLTAGRTYTYFVIAKDIQGKWSEISNELEVPTDLEPYRPSVP VDFRSTGRTTTSITLDWSVSTDASGPFDYELFREGVSIGKGKVPPFTDEGLLQSRLYGYHIIATDSLGNSSGLSEELLAT TESEASNDRPAPPGNLRQTGATPTSVSLAWDAPTGGTAVDVYHIYSFDAPTVTVDSTVLTYTVRGLTPSKTYQYLVGARD KDSELSGPSNIVHASTSAALPEWKTNTDYVKGDKVMYAGASYICLNPHHSQTDWYPGGAPTLWAPWTEQAGGRGFRDWPK EWQ
Specific function: Unknown
COG id: COG3469
COG function: function code G; Chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 fibronectin type-III domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR008957 - InterPro: IPR003961 - InterPro: IPR001223 - InterPro: IPR001579 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR013783 - InterPro: IPR015520 [H]
Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 88069; Mature: 88069
Theoretical pI: Translated: 4.60; Mature: 4.60
Prosite motif: PS50853 FN3 ; PS01095 CHITINASE_18 ; PS00196 COPPER_BLUE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNPKIITQYKNKKVDAASTMTDISGKNILMGFWHNWPSESGQGYQQGMFAEMPLTGIDK CCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCHHCCCEEECCCCCCHH AYNVIAVAFMKGAGIPTFKPYNLSDEAFRAQVAELNAQGRAVLISLGGADAHIELHAGQE HHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCH EALAYEIIRLVEVYGFDGLDIDLEQAAITFADNRTVLPAALRMVREHYETEGKHFIISMA HHHHHHHHHHHHHHCCCCCCEEHHHEEEEEECCCEEHHHHHHHHHHHHHCCCCEEEEEEC PEFPYLRSAARDTPLLKEITTYFPFLKEAVAFLTSFRSGGAYLAYIEALEDLYDFIAPQY CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCHH YNQGGDGIWVDELNLWVTQNNDAHKKEFLYYLTDSLIHGTRGFTKIPANRLAIGLPTNND HCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCCCCC AAATGYVINPDDVKYALDTLQADGNPIRGLMTWSVNWDNGTPKVGEAYKWEFAKRYGYLT CCCCCEEECCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHCEEEC GGETPVPDKPSVPTGLRSTEQTPTSVKLVWSLSAGQNPVLRYELRRDNSVSLFADSPSYE CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCC DTGLQSGITYSYQVRAIDVMGNTSAFSPAISVSTQAGGGGAANPTPPVLSLAGVTDRSVS CCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEE LEWTQSSSEAGLLEYQIARDGWPFVKVPADQPRVYTDENLTAGRTYTYFVIAKDIQGKWS EEEECCCCCCCEEEEEEECCCCCEEEECCCCCCEEECCCCCCCCEEEEEEEEECCCCCHH EISNELEVPTDLEPYRPSVPVDFRSTGRTTTSITLDWSVSTDASGPFDYELFREGVSIGK HHCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCC GKVPPFTDEGLLQSRLYGYHIIATDSLGNSSGLSEELLATTESEASNDRPAPPGNLRQTG CCCCCCCCCHHHHHHCCEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC ATPTSVSLAWDAPTGGTAVDVYHIYSFDAPTVTVDSTVLTYTVRGLTPSKTYQYLVGARD CCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEECCEEEEEEEECCCCCCCEEEEECCCC KDSELSGPSNIVHASTSAALPEWKTNTDYVKGDKVMYAGASYICLNPHHSQTDWYPGGAP CCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCEEEEECCEEEEECCCCCCCCCCCCCCC TLWAPWTEQAGGRGFRDWPKEWQ EEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLNPKIITQYKNKKVDAASTMTDISGKNILMGFWHNWPSESGQGYQQGMFAEMPLTGIDK CCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCHHCCCEEECCCCCCHH AYNVIAVAFMKGAGIPTFKPYNLSDEAFRAQVAELNAQGRAVLISLGGADAHIELHAGQE HHHHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCH EALAYEIIRLVEVYGFDGLDIDLEQAAITFADNRTVLPAALRMVREHYETEGKHFIISMA HHHHHHHHHHHHHHCCCCCCEEHHHEEEEEECCCEEHHHHHHHHHHHHHCCCCEEEEEEC PEFPYLRSAARDTPLLKEITTYFPFLKEAVAFLTSFRSGGAYLAYIEALEDLYDFIAPQY CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCHH YNQGGDGIWVDELNLWVTQNNDAHKKEFLYYLTDSLIHGTRGFTKIPANRLAIGLPTNND HCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCEEEECCCCCC AAATGYVINPDDVKYALDTLQADGNPIRGLMTWSVNWDNGTPKVGEAYKWEFAKRYGYLT CCCCCEEECCHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHCEEEC GGETPVPDKPSVPTGLRSTEQTPTSVKLVWSLSAGQNPVLRYELRRDNSVSLFADSPSYE CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCC DTGLQSGITYSYQVRAIDVMGNTSAFSPAISVSTQAGGGGAANPTPPVLSLAGVTDRSVS CCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCEEE LEWTQSSSEAGLLEYQIARDGWPFVKVPADQPRVYTDENLTAGRTYTYFVIAKDIQGKWS EEEECCCCCCCEEEEEEECCCCCEEEECCCCCCEEECCCCCCCCEEEEEEEEECCCCCHH EISNELEVPTDLEPYRPSVPVDFRSTGRTTTSITLDWSVSTDASGPFDYELFREGVSIGK HHCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCC GKVPPFTDEGLLQSRLYGYHIIATDSLGNSSGLSEELLATTESEASNDRPAPPGNLRQTG CCCCCCCCCHHHHHHCCEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCC ATPTSVSLAWDAPTGGTAVDVYHIYSFDAPTVTVDSTVLTYTVRGLTPSKTYQYLVGARD CCCCEEEEEECCCCCCCEEEEEEEEECCCCEEEECCEEEEEEEECCCCCCCEEEEECCCC KDSELSGPSNIVHASTSAALPEWKTNTDYVKGDKVMYAGASYICLNPHHSQTDWYPGGAP CCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCEEEEECCEEEEECCCCCCCCCCCCCCC TLWAPWTEQAGGRGFRDWPKEWQ EEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1729234 [H]