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The map label for this gene is 66047933

Identifier: 66047933

GI number: 66047933

Start: 5580137

End: 5581084

Strand: Direct

Name: 66047933

Synonym: Psyr_4709

Alternate gene names: NA

Gene position: 5580137-5581084 (Clockwise)

Preceding gene: 66047930

Following gene: 66047934

Centisome position: 91.57

GC content: 56.75

Gene sequence:

>948_bases
ATGAAAGGTTCCAAATCGTTGCTGTTGGCCGCTACGCTCTGTATGCCGGTGCTAGCCCAGGCAGCCGAGCCAGAGGCCTG
TCATACGGTCAACTTCTCCGATGTCGGCTGGACTGACATTACCGTCACTACTGCGGTAACCAGCGCCGTACTCGAGTCAC
TGGGTTACAAGACCAAAACCACCATGATTTCCGTACCGGTGACCTACAAGTCGCTGGCCGACGGCAAGAACATGGACGTG
TTCCTCGGCAACTGGATGCCGACCATGGAAAACGACATCAAGCCCTATCGCGAAGCAGGGACCGTCGAAACCGTGCGTGC
CAACCTGGAGAACGCCAAGTACACCCTGGCGGTCCCGGAAGCGCTTTACGACAAAGGCCTGCATGACTTCGCCGACATCG
CCAAATTCAAGAAGGAACTGGGCGGCAAGATCTACGGCATCGAGCCTGGCAACGACGGTAATCGCCTGATCCAGAGCATG
ATCGACAAGAACGCCTTCGGCCTCAAGGACGCAGGCTTCAAGGTCGTTGAATCCAGCGAAGCCGCAATGCTTTCGCAGGT
CGACCGCGCCGTGAAACGCAAAAACGATGTGGTATTCCTCGGTTGGGAACCGCATCCGATGAACACCCGCTTCAAGATGA
AATATCTGACTGGCGGCGATGACTTCTTCGGCCCCAACTACGGCCAGGCGACCATCTACACCAACACCCGCAAAGGCTAC
AGTCAGGAGTGCAGCAACGTAGGTCAGTTGCTCAAGAACCTGTCCTTCACGCTGAACATGGAAAGCACCCTGATGGGCAA
CGTGCTGGACGACAAGATGAAGCCTGATGCCGCCGCCAAGGCGTGGATCAAGAAAAACCCTCAAGTACTCGACACCTGGC
TCGCAGGCGTGAACACCGTCGATGGCAAGCCAGGCCTGGAGGCAGCCAAAGCCAAGTTGACCCAGTAA

Upstream 100 bases:

>100_bases
CCGGCGCAGTGATGGAGCTTCGCGAAAAGCCTCGCCAACCCATAAGCCGCGTCAGCGTTCACCTGCTGATGACCAGAAGA
AACTCACAGGAGTCCACCCC

Downstream 100 bases:

>100_bases
GCCGACAGCAGGCGGGACTGAACCGCCTGCTGCCCTCTTCACCTTCCGCAAGCGGACACCCGAAATCATGCTGACTGACC
ATAAAATCCCTCTGGGCGAG

Product: substrate-binding region of ABC-type glycine betaine transport system

Products: NA

Alternate protein names: Fragment [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLESLGYKTKTTMISVPVTYKSLADGKNMDV
FLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVPEALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSM
IDKNAFGLKDAGFKVVESSEAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKGY
SQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVNTVDGKPGLEAAKAKLTQ

Sequences:

>Translated_315_residues
MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLESLGYKTKTTMISVPVTYKSLADGKNMDV
FLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVPEALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSM
IDKNAFGLKDAGFKVVESSEAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKGY
SQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVNTVDGKPGLEAAKAKLTQ
>Mature_315_residues
MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLESLGYKTKTTMISVPVTYKSLADGKNMDV
FLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVPEALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSM
IDKNAFGLKDAGFKVVESSEAAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKGY
SQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVNTVDGKPGLEAAKAKLTQ

Specific function: Unknown

COG id: COG2113

COG function: function code E; ABC-type proline/glycine betaine transport systems, periplasmic components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 34474; Mature: 34474

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLESLGYKTKT
CCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHCCCEEE
TMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVPE
EEEEECCCHHHHCCCCCCEEEECCCCCCHHHCCCHHHHCCCHHHHHHHHCCCEEEEECCH
ALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESSE
HHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCH
AAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKGY
HHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCH
SQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVNTV
HHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCC
DGKPGLEAAKAKLTQ
CCCCCHHHHHHHCCC
>Mature Secondary Structure
MKGSKSLLLAATLCMPVLAQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLESLGYKTKT
CCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCEEHHHHHHHHHHHHHHCCCEEE
TMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKPYREAGTVETVRANLENAKYTLAVPE
EEEEECCCHHHHCCCCCCEEEECCCCCCHHHCCCHHHHCCCHHHHHHHHCCCEEEEECCH
ALYDKGLHDFADIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESSE
HHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEECCH
AAMLSQVDRAVKRKNDVVFLGWEPHPMNTRFKMKYLTGGDDFFGPNYGQATIYTNTRKGY
HHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCH
SQECSNVGQLLKNLSFTLNMESTLMGNVLDDKMKPDAAAKAWIKKNPQVLDTWLAGVNTV
HHHHHHHHHHHHCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCC
DGKPGLEAAKAKLTQ
CCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10708384 [H]