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The map label for this gene is comF [H]

Identifier: 66047912

GI number: 66047912

Start: 5555991

End: 5556725

Strand: Direct

Name: comF [H]

Synonym: Psyr_4688

Alternate gene names: 66047912

Gene position: 5555991-5556725 (Clockwise)

Preceding gene: 66047904

Following gene: 66047913

Centisome position: 91.18

GC content: 61.09

Gene sequence:

>735_bases
ATGCGCTGTCAACCCAGCTACCCGCACGAGGTTTACATCTGGTTAAAAAACAAACAATCCTGTTTGTTATGTGATGAACG
CAGTGAGGTGCCCGCGCCCATCTGCGTGCCCTGCGAAGCAGAGCTGCCGTGGCTGGGCAACGCTTGCGAGTGCTGTGCGC
TGCCGTTACCCCGTTCAGGCATGAGCTGCGCGCAATGCTGCAAGCAACCGCCCGGCTTTACCCAGGTCATCGCGCCCTGG
CTGTACGATTTCCCGGTCGACGGTTTGATCACCCGCTTCAAACATAACGGTAAATGGCCCATGGGACGACTGCTGGCGGA
ACTGTGCGCGCACTATCTGCAGCATCGTTTCGAGGAAGACCTGCCACGTCCCGACTGCCTCATTCCGGTGCCGTTGGCCA
ACAAACGCTTGCGCCAGCGCGGCTACAATCAGGCGGCAATGCTGGCCGGCTGGCTGGGTAAACAGCTGCAACTGCCTGTC
GACGAAGGGCATGTGTTGCGCAGCCGCGAGACAACCGCGCAACAGGGCCTGGACGCCAAGGCCCGCAAACGCAACCTGCG
CGGTGCTTTCACCCTGATTGATCCCGACTGGGTAAAAGGCCGGCACCTGGCGCTGGTCGATGACGTTCTGACCACCGGCT
CGACAGCAGAGGTCATTGCAGGTTTATTGAACACCGCCGGTGCGCGGCGGGTGGATGTGTATTGCCTGGCGCGAACGCCC
AGGCCGGGGGATTGA

Upstream 100 bases:

>100_bases
TGGCGCTCATCGGGCGGCTCCTTGGTGTTTCTGGGCAATGCGCGAGGGCGGTAAAGACCCCACTCGCTACACGGATGTCG
GGCATATTTAAGGAAGAGTC

Downstream 100 bases:

>100_bases
TTGGGCGCTGCGGGCTAATATTCTCATCGCTCCCACGCTCCGCGTGGTAGCGCAGCCCTGGACGCTCCGCGTCCGGTTTC
GACGTCATGCACCAGAGCGA

Product: phosphoribosyltransferase

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MRCQPSYPHEVYIWLKNKQSCLLCDERSEVPAPICVPCEAELPWLGNACECCALPLPRSGMSCAQCCKQPPGFTQVIAPW
LYDFPVDGLITRFKHNGKWPMGRLLAELCAHYLQHRFEEDLPRPDCLIPVPLANKRLRQRGYNQAAMLAGWLGKQLQLPV
DEGHVLRSRETTAQQGLDAKARKRNLRGAFTLIDPDWVKGRHLALVDDVLTTGSTAEVIAGLLNTAGARRVDVYCLARTP
RPGD

Sequences:

>Translated_244_residues
MRCQPSYPHEVYIWLKNKQSCLLCDERSEVPAPICVPCEAELPWLGNACECCALPLPRSGMSCAQCCKQPPGFTQVIAPW
LYDFPVDGLITRFKHNGKWPMGRLLAELCAHYLQHRFEEDLPRPDCLIPVPLANKRLRQRGYNQAAMLAGWLGKQLQLPV
DEGHVLRSRETTAQQGLDAKARKRNLRGAFTLIDPDWVKGRHLALVDDVLTTGSTAEVIAGLLNTAGARRVDVYCLARTP
RPGD
>Mature_244_residues
MRCQPSYPHEVYIWLKNKQSCLLCDERSEVPAPICVPCEAELPWLGNACECCALPLPRSGMSCAQCCKQPPGFTQVIAPW
LYDFPVDGLITRFKHNGKWPMGRLLAELCAHYLQHRFEEDLPRPDCLIPVPLANKRLRQRGYNQAAMLAGWLGKQLQLPV
DEGHVLRSRETTAQQGLDAKARKRNLRGAFTLIDPDWVKGRHLALVDDVLTTGSTAEVIAGLLNTAGARRVDVYCLARTP
RPGD

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=207, Percent_Identity=37.1980676328502, Blast_Score=113, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 27311; Mature: 27311

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
5.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCQPSYPHEVYIWLKNKQSCLLCDERSEVPAPICVPCEAELPWLGNACECCALPLPRSG
CCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCC
MSCAQCCKQPPGFTQVIAPWLYDFPVDGLITRFKHNGKWPMGRLLAELCAHYLQHRFEED
CHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
LPRPDCLIPVPLANKRLRQRGYNQAAMLAGWLGKQLQLPVDEGHVLRSRETTAQQGLDAK
CCCCCCEEECCCCHHHHHHCCCCHHHHHHHHCCCEEECCCCCCCEECCCHHHHHHCCCHH
ARKRNLRGAFTLIDPDWVKGRHLALVDDVLTTGSTAEVIAGLLNTAGARRVDVYCLARTP
HHHCCCCEEEEEECCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCC
RPGD
CCCC
>Mature Secondary Structure
MRCQPSYPHEVYIWLKNKQSCLLCDERSEVPAPICVPCEAELPWLGNACECCALPLPRSG
CCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCCC
MSCAQCCKQPPGFTQVIAPWLYDFPVDGLITRFKHNGKWPMGRLLAELCAHYLQHRFEED
CHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHC
LPRPDCLIPVPLANKRLRQRGYNQAAMLAGWLGKQLQLPVDEGHVLRSRETTAQQGLDAK
CCCCCCEEECCCCHHHHHHCCCCHHHHHHHHCCCEEECCCCCCCEECCCHHHHHHCCCHH
ARKRNLRGAFTLIDPDWVKGRHLALVDDVLTTGSTAEVIAGLLNTAGARRVDVYCLARTP
HHHCCCCEEEEEECCCCCCCCEEEEHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCC
RPGD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]