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The map label for this gene is secY [H]

Identifier: 66047755

GI number: 66047755

Start: 5392929

End: 5394263

Strand: Reverse

Name: secY [H]

Synonym: Psyr_4528

Alternate gene names: 66047755

Gene position: 5394263-5392929 (Counterclockwise)

Preceding gene: 66047756

Following gene: 66047754

Centisome position: 88.52

GC content: 54.91

Gene sequence:

>1335_bases
ATGGCTAAGCAAGGTGCTCTCTCAGCGCTCGGCAAAGGCGGTATGTCTGAACTCTGGGCTCGTCTGCGTTTTCTGTTCCT
GGCGATTATCGTCTACCGAATAGGCGCACACATCCCGGTTCCAGGTATCAACCCGGATCGACTCGCAGAACTGTTTCGAC
AGAATGAGGGGACCATTCTTAGCTTGTTCAACATGTTTTCCGGTGGCGCGCTGGAACGGATGAGCATCTTTGCACTGGGG
ATCATGCCGTACATTTCGGCATCGATCATCATGCAGTTGATGACTGCCGTCAGCCCGCAGCTGGAGCAGTTGAAGAAGGA
AGGTGAAGCTGGCCGTCGCAAGATAAGCCAGTACACCCGCTATGGCACCGTTGTCCTGGCTCTGGTCCAAGCTATCGGCA
TGTCCGTTGGTCTGGCGAGTCAGGGCGTCGCGTTTTCTGGGGACCTGGGTTTCCACTTTGTGGCCGTAACTACCTTCGTG
GCAGGTGCGATGTTCATGATGTGGCTGGGCGAGCAGATCACCGAGCGCGGTGTCGGCAACGGTATCTCGATGTTGATTTT
CGCAGGTATCGTCGCCGGTCTTCCGAGAGCAATAGGGCAGTCTTTCGAGTCTGCACGTCAGGGTGATATCAATATCTTCG
CTCTGGTTGCAATCGGTTTGCTGGCGGTAGCGATCATCGGTTTTGTGGTGTTCATTGAGCGTGGTCAGCGTCGAATCGCC
GTTCACTACGCCAAGCGTCAGCAGGGCCGCAAGGTCTTCGCTGCGCAGACAAGCCACTTGCCGCTGAAAGTGAACATGGC
TGGTGTGATACCGGCCATTTTCGCGAGCAGCATTTTGCTGTTCCCGGCTTCGTTGGGGTCCTGGTTCGGTCAGTCTGAAG
GTCTGGGCTGGTTGCAGGACATCTCGCAGTCGATCGCTCCTGGTCAGCCGTTGAATATTCTGCTGTTTAGTGCAGGGATT
ATTTTCTTCTGCTTCTTCTATACGGCGTTGATGTTCAATCCGAAAGACGTAGCGGAAAACCTGAAGAAGTCCGGTGCCTT
TATTCCGGGTATTCGTCCAGGCGAGCAGTCGGCGCGCTACATTGATGGCGTTTTGACTCGCTTGACCATGTTCGGTGCTC
TATATATGACGGCCGTGTGTCTGCTTCCCCAGTTTCTGGTGGTCGCGGCAAACGTACCGTTCTACCTTGGCGGGACCTCG
TTGCTGATCGTGGTCGTGGTTGTGATGGACTTTATGTCGCAAGTGCAATCTCACCTCGTTTCGCACCAGTATGAATCCCT
GATGAAGAAAGCCAACCTGAAGGGCTACGGTGGCAGCGGCGGTATGCTGCGCTGA

Upstream 100 bases:

>100_bases
GTCGGGCGAAGTTACTCGCGCTGTCACTATCAAGGGTATCGCCGCCACCAAAGGTGCGCGTGCGGCTATCGAAGCAGCTG
GCGGCAAGTTCGAGGAATAA

Downstream 100 bases:

>100_bases
AGCACCCCTAAGGTTCGAGGAGTTGGTGATGAAAGTTCGTGCATCGGTGAAAAAGCTGTGCCGTAACTGCAAGATTATCC
GCCGCGAAGGTGTGGTTCGA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MAKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLAELFRQNEGTILSLFNMFSGGALERMSIFALG
IMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTRYGTVVLALVQAIGMSVGLASQGVAFSGDLGFHFVAVTTFV
AGAMFMMWLGEQITERGVGNGISMLIFAGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIA
VHYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGSWFGQSEGLGWLQDISQSIAPGQPLNILLFSAGI
IFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARYIDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTS
LLIVVVVVMDFMSQVQSHLVSHQYESLMKKANLKGYGGSGGMLR

Sequences:

>Translated_444_residues
MAKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLAELFRQNEGTILSLFNMFSGGALERMSIFALG
IMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTRYGTVVLALVQAIGMSVGLASQGVAFSGDLGFHFVAVTTFV
AGAMFMMWLGEQITERGVGNGISMLIFAGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIA
VHYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGSWFGQSEGLGWLQDISQSIAPGQPLNILLFSAGI
IFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARYIDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTS
LLIVVVVVMDFMSQVQSHLVSHQYESLMKKANLKGYGGSGGMLR
>Mature_443_residues
AKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLAELFRQNEGTILSLFNMFSGGALERMSIFALGI
MPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTRYGTVVLALVQAIGMSVGLASQGVAFSGDLGFHFVAVTTFVA
GAMFMMWLGEQITERGVGNGISMLIFAGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIAV
HYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGSWFGQSEGLGWLQDISQSIAPGQPLNILLFSAGII
FFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARYIDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTSL
LIVVVVVMDFMSQVQSHLVSHQYESLMKKANLKGYGGSGGMLR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=442, Percent_Identity=64.7058823529412, Blast_Score=549, Evalue=1e-157,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47913; Mature: 47782

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLAELFRQNEGTIL
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHH
SLFNMFSGGALERMSIFALGIMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
YGTVVLALVQAIGMSVGLASQGVAFSGDLGFHFVAVTTFVAGAMFMMWLGEQITERGVGN
HHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GISMLIFAGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VHYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGSWFGQSEGLGWLQD
HHHHHHHCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ISQSIAPGQPLNILLFSAGIIFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARY
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
IDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTSLLIVVVVVMDFMSQVQSHLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
SHQYESLMKKANLKGYGGSGGMLR
HHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKQGALSALGKGGMSELWARLRFLFLAIIVYRIGAHIPVPGINPDRLAELFRQNEGTIL
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHH
SLFNMFSGGALERMSIFALGIMPYISASIIMQLMTAVSPQLEQLKKEGEAGRRKISQYTR
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
YGTVVLALVQAIGMSVGLASQGVAFSGDLGFHFVAVTTFVAGAMFMMWLGEQITERGVGN
HHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GISMLIFAGIVAGLPRAIGQSFESARQGDINIFALVAIGLLAVAIIGFVVFIERGQRRIA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VHYAKRQQGRKVFAAQTSHLPLKVNMAGVIPAIFASSILLFPASLGSWFGQSEGLGWLQD
HHHHHHHCCCEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
ISQSIAPGQPLNILLFSAGIIFFCFFYTALMFNPKDVAENLKKSGAFIPGIRPGEQSARY
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
IDGVLTRLTMFGALYMTAVCLLPQFLVVAANVPFYLGGTSLLIVVVVVMDFMSQVQSHLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
SHQYESLMKKANLKGYGGSGGMLR
HHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]