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The map label for this gene is xynB [H]

Identifier: 66047735

GI number: 66047735

Start: 5371848

End: 5372960

Strand: Direct

Name: xynB [H]

Synonym: Psyr_4508

Alternate gene names: 66047735

Gene position: 5371848-5372960 (Clockwise)

Preceding gene: 66047734

Following gene: 66047736

Centisome position: 88.15

GC content: 61.01

Gene sequence:

>1113_bases
ATGCGCCGTGCTAGTCGACGCAGTTTTCTGACTGCGTTTGTCCGCCTGCTGGCGTGCCTGCCCTTTGTGAACAGCAGGCT
GCTGGCGGCAGAAACCTTTACCGCGTTGCGCCAGCCTGAAGCCGAGAAAGGCATACGGTTCGGCTTTGCGGTTGATCCGG
CAAAGCTGAATGAAGACGCGGCCTACCGGGAACTGGTCGCCCGTCAGGCCAGCATCGTAGTGCCAGAGAACGCCTTGAAG
TGGCAGACCGTCCACCCCGAACCGGAGCGTTACAACTTCGCGCCCGCCGACGCGATCGCGGCGTTTGCCAAAGCGCATGA
CCAGCGTATGCGCGGGCACACCTTCTGCTGGCATCGTTCTTTACCCGACTGGGTTCACCGTACCGTCACGCCGACGAACG
CCGAGGCGGTGCTGAAGGCGCACATCAGTACCGTCGCCAGCCATTATCGTGGCCTCATCAGCACATGGGACGTTGTCAAC
GAAGCCATCCAGCTGGAGGACGGCCAGCCTGACGGGCTGCGCAATTCGTTCTGGTATCAGATGCTCGGGCCTCGCTACCT
GGACATAGCCTTCAACGCTGCGCACAAGGCCGACCCGGACGCCCTGCTCTGCTACAACGATTACGGCCTGGAAAAGGATA
CCCATTACGGCGAAAGCCGACGCACTGCCGTCGTCGCCCTGCTGCGCGGTCTCAAGCAGCGGGGCATTCCGATACACGGC
CTGGGCATTCAGTCCCATCTGCGTGCAGGCGACACCTTTGGTTCGGGCCTGTCTCGCTTTATTCTGGCAGTGCGGGATAT
GGGGTTGTCGATCCACATCACGGAACTCGACGTCGATGACAGCCACTTGACGGGGTCCATCGCAGATCGCGATGGATCAG
TTGCAGCGACTTATAAGCGGTATCTCGACGTGGTGCTTGCCACGCGCTCGGTGTCTACCGTTATTACGTGGGGCGTTTGG
GACAGCCCGCATGTTGCCGGCGCCACGGCCAGCAACGGGCCGTTGGCACAGCGGGCATTAGCGTTTGGCCCACGAGGTGA
GGTTAAGCCGGCGAGCTGGGTGATCGCACATTGTTTCGAAAACGCGCAAACACAGAAGGATGCGCGGTTTTAG

Upstream 100 bases:

>100_bases
GGGAAGCCGGATTGTTGTGCACGATTGAAGGCGAACAGAAACAAGGCTCGATGACGGTGATGGTAGGCCGTGAGGAGCTG
ATGGGGATTTTTGGTGCGTA

Downstream 100 bases:

>100_bases
ATGCTCCGCGGCTTTCACGGCAGCAGTACAACCAGAGTGGTTCAGCGCTTTCTGACACCTGAAACAACGAAGCCCCCGAT
AAACGGGGGCTCCGGCTCTG

Product: endo-1,4-beta-xylanase

Products: NA

Alternate protein names: Xylanase B; 1,4-beta-D-xylan xylanohydrolase B [H]

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MRRASRRSFLTAFVRLLACLPFVNSRLLAAETFTALRQPEAEKGIRFGFAVDPAKLNEDAAYRELVARQASIVVPENALK
WQTVHPEPERYNFAPADAIAAFAKAHDQRMRGHTFCWHRSLPDWVHRTVTPTNAEAVLKAHISTVASHYRGLISTWDVVN
EAIQLEDGQPDGLRNSFWYQMLGPRYLDIAFNAAHKADPDALLCYNDYGLEKDTHYGESRRTAVVALLRGLKQRGIPIHG
LGIQSHLRAGDTFGSGLSRFILAVRDMGLSIHITELDVDDSHLTGSIADRDGSVAATYKRYLDVVLATRSVSTVITWGVW
DSPHVAGATASNGPLAQRALAFGPRGEVKPASWVIAHCFENAQTQKDARF

Sequences:

>Translated_370_residues
MRRASRRSFLTAFVRLLACLPFVNSRLLAAETFTALRQPEAEKGIRFGFAVDPAKLNEDAAYRELVARQASIVVPENALK
WQTVHPEPERYNFAPADAIAAFAKAHDQRMRGHTFCWHRSLPDWVHRTVTPTNAEAVLKAHISTVASHYRGLISTWDVVN
EAIQLEDGQPDGLRNSFWYQMLGPRYLDIAFNAAHKADPDALLCYNDYGLEKDTHYGESRRTAVVALLRGLKQRGIPIHG
LGIQSHLRAGDTFGSGLSRFILAVRDMGLSIHITELDVDDSHLTGSIADRDGSVAATYKRYLDVVLATRSVSTVITWGVW
DSPHVAGATASNGPLAQRALAFGPRGEVKPASWVIAHCFENAQTQKDARF
>Mature_370_residues
MRRASRRSFLTAFVRLLACLPFVNSRLLAAETFTALRQPEAEKGIRFGFAVDPAKLNEDAAYRELVARQASIVVPENALK
WQTVHPEPERYNFAPADAIAAFAKAHDQRMRGHTFCWHRSLPDWVHRTVTPTNAEAVLKAHISTVASHYRGLISTWDVVN
EAIQLEDGQPDGLRNSFWYQMLGPRYLDIAFNAAHKADPDALLCYNDYGLEKDTHYGESRRTAVVALLRGLKQRGIPIHG
LGIQSHLRAGDTFGSGLSRFILAVRDMGLSIHITELDVDDSHLTGSIADRDGSVAATYKRYLDVVLATRSVSTVITWGVW
DSPHVAGATASNGPLAQRALAFGPRGEVKPASWVIAHCFENAQTQKDARF

Specific function: Unknown

COG id: COG3693

COG function: function code G; Beta-1,4-xylanase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 10 (cellulase F) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001000
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00331 Glyco_hydro_10 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 41024; Mature: 41024

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRASRRSFLTAFVRLLACLPFVNSRLLAAETFTALRQPEAEKGIRFGFAVDPAKLNEDA
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCEEEEEECHHHCCCHH
AYRELVARQASIVVPENALKWQTVHPEPERYNFAPADAIAAFAKAHDQRMRGHTFCWHRS
HHHHHHHHHCCEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCC
LPDWVHRTVTPTNAEAVLKAHISTVASHYRGLISTWDVVNEAIQLEDGQPDGLRNSFWYQ
CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
MLGPRYLDIAFNAAHKADPDALLCYNDYGLEKDTHYGESRRTAVVALLRGLKQRGIPIHG
HCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
LGIQSHLRAGDTFGSGLSRFILAVRDMGLSIHITELDVDDSHLTGSIADRDGSVAATYKR
CCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEECCCCCCHHHHHHH
YLDVVLATRSVSTVITWGVWDSPHVAGATASNGPLAQRALAFGPRGEVKPASWVIAHCFE
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
NAQTQKDARF
HHCCHHCCCC
>Mature Secondary Structure
MRRASRRSFLTAFVRLLACLPFVNSRLLAAETFTALRQPEAEKGIRFGFAVDPAKLNEDA
CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCEEEEEECHHHCCCHH
AYRELVARQASIVVPENALKWQTVHPEPERYNFAPADAIAAFAKAHDQRMRGHTFCWHRS
HHHHHHHHHCCEEECCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCC
LPDWVHRTVTPTNAEAVLKAHISTVASHYRGLISTWDVVNEAIQLEDGQPDGLRNSFWYQ
CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
MLGPRYLDIAFNAAHKADPDALLCYNDYGLEKDTHYGESRRTAVVALLRGLKQRGIPIHG
HCCCEEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
LGIQSHLRAGDTFGSGLSRFILAVRDMGLSIHITELDVDDSHLTGSIADRDGSVAATYKR
CCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEECCCCCCHHHHHHH
YLDVVLATRSVSTVITWGVWDSPHVAGATASNGPLAQRALAFGPRGEVKPASWVIAHCFE
HHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH
NAQTQKDARF
HHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA