Click here to switch to the map view.

The map label for this gene is 66047723

Identifier: 66047723

GI number: 66047723

Start: 5359307

End: 5360020

Strand: Direct

Name: 66047723

Synonym: Psyr_4496

Alternate gene names: NA

Gene position: 5359307-5360020 (Clockwise)

Preceding gene: 66047722

Following gene: 66047724

Centisome position: 87.95

GC content: 66.67

Gene sequence:

>714_bases
GTGGATGCGACGCTGACACCCCTGCTGCACCTTCAGCCATTGCCTGCCGGCAGCGCCTCGCGATTGCTGCGCCGAGGATG
CGCGATAACGCTGGTGGTGGCCGTGCATATTTTGGCATTGAGCATGGTGACCGGGTCATCGCCCCCTGCGCTTGCGCCGC
AGGTGACTCGCACTATTTACGCCTCGGTCATCAATGAACCGACTCCGGCGCCAGCCGCAAGTGCCGCGCCCACGCCACCG
CCTCCCGTTGCCCCGGTCGTACCGGCACCAGCGTCTGTGGCCGTTCAGCCGGTGGCCCGGCACAAGCCCGTGGCCAAACC
GCAGGTGATGCAACGCCCCGTTGTGGCCGCCGCAACGTCTGCCCCCGCGACCATCAGCACTGCGGCTGCCGCACCGGTAG
TTGCGCAAACTCCCGCACCACCGCCGCAGCCCAAGACCCTCACCCGTGGCGTCGAATACGTGCATGAACCACAACCCGAC
TATCCCGACAGCGCGCGTGAAGAGGGCCACGAGGGCACCGTGATCCTGCGGGTGCTGGTGGACGAGCACGGCAAGCCCGG
CGCGGTGGACATCGTACGCTCCTCGGGCTTTGGCAACCTCGACGAGGCGGGCAGGACGGCTGTGCGCGGCGCACTGTTCA
AGCCTCATTTGGAGGAGGGTCATGCGGTGTCGGTGTACGTGATCGTGCCGTTGCGATTCCAGCTCGACAGTTAG

Upstream 100 bases:

>100_bases
CTCCGACACGCGTTACGAGGTGCCTGTACCGGCCTCGGACCCAACTTTCGCAGGGAATGCGCCCGATGTGCCCGGCCTAC
CGGCCTGGAGGAAATCAATC

Downstream 100 bases:

>100_bases
CACTCACGCAGGCGTAACCCACCATCTTTTATCGACGGGCCTCCCGGTCAGGGCAGTGCTCACCTCAAAGAAAGGAAATA
CATATGGACACCGGAACACT

Product: TonB, C-terminal

Products: NA

Alternate protein names: NB-Like Protein; NB Protein; NB C-Terminal; NB Domain-Containing Protein; Periplasmic Protein nB

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MDATLTPLLHLQPLPAGSASRLLRRGCAITLVVAVHILALSMVTGSSPPALAPQVTRTIYASVINEPTPAPAASAAPTPP
PPVAPVVPAPASVAVQPVARHKPVAKPQVMQRPVVAAATSAPATISTAAAAPVVAQTPAPPPQPKTLTRGVEYVHEPQPD
YPDSAREEGHEGTVILRVLVDEHGKPGAVDIVRSSGFGNLDEAGRTAVRGALFKPHLEEGHAVSVYVIVPLRFQLDS

Sequences:

>Translated_237_residues
MDATLTPLLHLQPLPAGSASRLLRRGCAITLVVAVHILALSMVTGSSPPALAPQVTRTIYASVINEPTPAPAASAAPTPP
PPVAPVVPAPASVAVQPVARHKPVAKPQVMQRPVVAAATSAPATISTAAAAPVVAQTPAPPPQPKTLTRGVEYVHEPQPD
YPDSAREEGHEGTVILRVLVDEHGKPGAVDIVRSSGFGNLDEAGRTAVRGALFKPHLEEGHAVSVYVIVPLRFQLDS
>Mature_237_residues
MDATLTPLLHLQPLPAGSASRLLRRGCAITLVVAVHILALSMVTGSSPPALAPQVTRTIYASVINEPTPAPAASAAPTPP
PPVAPVVPAPASVAVQPVARHKPVAKPQVMQRPVVAAATSAPATISTAAAAPVVAQTPAPPPQPKTLTRGVEYVHEPQPD
YPDSAREEGHEGTVILRVLVDEHGKPGAVDIVRSSGFGNLDEAGRTAVRGALFKPHLEEGHAVSVYVIVPLRFQLDS

Specific function: Unknown

COG id: COG0810

COG function: function code M; Periplasmic protein TonB, links inner and outer membranes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24482; Mature: 24482

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATLTPLLHLQPLPAGSASRLLRRGCAITLVVAVHILALSMVTGSSPPALAPQVTRTIY
CCCCCCCCEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
ASVINEPTPAPAASAAPTPPPPVAPVVPAPASVAVQPVARHKPVAKPQVMQRPVVAAATS
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCHHHCCCCCCCHHHHCCHHEECCC
APATISTAAAAPVVAQTPAPPPQPKTLTRGVEYVHEPQPDYPDSAREEGHEGTVILRVLV
CCCEEHHHHCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEEEEE
DEHGKPGAVDIVRSSGFGNLDEAGRTAVRGALFKPHLEEGHAVSVYVIVPLRFQLDS
CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECC
>Mature Secondary Structure
MDATLTPLLHLQPLPAGSASRLLRRGCAITLVVAVHILALSMVTGSSPPALAPQVTRTIY
CCCCCCCCEEECCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
ASVINEPTPAPAASAAPTPPPPVAPVVPAPASVAVQPVARHKPVAKPQVMQRPVVAAATS
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECCHHHCCCCCCCHHHHCCHHEECCC
APATISTAAAAPVVAQTPAPPPQPKTLTRGVEYVHEPQPDYPDSAREEGHEGTVILRVLV
CCCEEHHHHCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCCEEEEEEEE
DEHGKPGAVDIVRSSGFGNLDEAGRTAVRGALFKPHLEEGHAVSVYVIVPLRFQLDS
CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA