Click here to switch to the map view.

The map label for this gene is exbD [H]

Identifier: 66047709

GI number: 66047709

Start: 5343623

End: 5344027

Strand: Direct

Name: exbD [H]

Synonym: Psyr_4482

Alternate gene names: 66047709

Gene position: 5343623-5344027 (Clockwise)

Preceding gene: 66047708

Following gene: 66047710

Centisome position: 87.69

GC content: 62.22

Gene sequence:

>405_bases
ATGTCCTTCTCCACGTCCAATGATGACGATGCAATCAGCGACATCAACATCACGCCGTTGGTGGATGTGATGCTGGTACT
GCTGGTGACCTTCATCGTCACCGCACCGCTGCTCAATAACGCCATACCGCTGGACCTGCCGCAGACCGTCGCCACCACCT
CACTGGATCAGGCCGACCCGGTGGTGGTGAGTGTCGATGCCAGCGGCGGCGTGTTCATCGACAGCGAAGCTGTAGCGCTG
GAGCAACTTCCGGAGGCGCTGCAAGCCCTGCACAGCAAAGACCCGGACGTCGCCGTCAGCCTGCGTGCCGATCAGGCGAC
GGGTTACGGCCGCGTGGCCCAGGTGCTGGCCGATGTGCAGAAAGCCGGCATCAGTCGCCTGTCGGTGATTACCGAAAGCC
CCTGA

Upstream 100 bases:

>100_bases
TTCGCCGTGGACTTCCTCAACCTCTCGCAACGCAACGCCTTCCGGCTGCAGCCCGACCATCGCGACAAGACGGCCCCGAG
CCTGAAAGGAGTGAGCTGAC

Downstream 100 bases:

>100_bases
AACAAAGACCTGTCGTTCACCACATGACCCGCCGCAAGCGCGGCGCCCTGACGCCTCCAGGAAAACCTTTCCATGAACAA
TCGATCGATACTGCGTGCAC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSFSTSNDDDAISDINITPLVDVMLVLLVTFIVTAPLLNNAIPLDLPQTVATTSLDQADPVVVSVDASGGVFIDSEAVAL
EQLPEALQALHSKDPDVAVSLRADQATGYGRVAQVLADVQKAGISRLSVITESP

Sequences:

>Translated_134_residues
MSFSTSNDDDAISDINITPLVDVMLVLLVTFIVTAPLLNNAIPLDLPQTVATTSLDQADPVVVSVDASGGVFIDSEAVAL
EQLPEALQALHSKDPDVAVSLRADQATGYGRVAQVLADVQKAGISRLSVITESP
>Mature_133_residues
SFSTSNDDDAISDINITPLVDVMLVLLVTFIVTAPLLNNAIPLDLPQTVATTSLDQADPVVVSVDASGGVFIDSEAVALE
QLPEALQALHSKDPDVAVSLRADQATGYGRVAQVLADVQKAGISRLSVITESP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=127, Percent_Identity=33.8582677165354, Blast_Score=81, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 13970; Mature: 13839

Theoretical pI: Translated: 3.69; Mature: 3.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSTSNDDDAISDINITPLVDVMLVLLVTFIVTAPLLNNAIPLDLPQTVATTSLDQADP
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCC
VVVSVDASGGVFIDSEAVALEQLPEALQALHSKDPDVAVSLRADQATGYGRVAQVLADVQ
EEEEEECCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
KAGISRLSVITESP
HHCHHHHHEEECCC
>Mature Secondary Structure 
SFSTSNDDDAISDINITPLVDVMLVLLVTFIVTAPLLNNAIPLDLPQTVATTSLDQADP
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCC
VVVSVDASGGVFIDSEAVALEQLPEALQALHSKDPDVAVSLRADQATGYGRVAQVLADVQ
EEEEEECCCCEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH
KAGISRLSVITESP
HHCHHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10689178; 10984043 [H]