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The map label for this gene is ybiO [H]

Identifier: 66047704

GI number: 66047704

Start: 5337465

End: 5339783

Strand: Reverse

Name: ybiO [H]

Synonym: Psyr_4477

Alternate gene names: 66047704

Gene position: 5339783-5337465 (Counterclockwise)

Preceding gene: 66047706

Following gene: 66047703

Centisome position: 87.63

GC content: 60.5

Gene sequence:

>2319_bases
GTGGCGTCTCAGCTGAAAATCTTGATCCTTTCGGGTCTGCTGCTATTCGCAGGCAGTTTCAATCTCCAGGCGGCCGATGT
ACCTGCATTGCCGATGGGTGCGGCGGTGCCGGCAGACGACAAGGCGGCTGAAAAGGCTGACCCCAAAGCCGACTCCAAGG
CTGCTGACAAACCCGCTGCGAAAGCGGACGACAAGGCAGCGGACAAGGACCAGACGGATGCGAAACCGGCCGATGGCGCA
GAGCCTGCGGCCGAGGCTCCCGAGCTGCTGGTGCAGGGCGGATTGCTCGGCGCCATCAGTACCAGCATCGATGACGTCCA
GGAAAAGCTCAATCTGGACGACAACCTGTTCGACGTCTGGCAACTGCGCGCCGACCGCGCCGCCGATGAGCTCGAAAAGC
TGGTCAACAAACGCACTACACGTTCTCCATGGAGTGTCGCCGGGGACTTCCTCGCCCTGTCTTTTGTATGGATCGCATCG
TTTGCGATTCTGACCACGCTGGGTCGTTTTCTGGCAGTACGCTTGTGCCGTACACCGTTCATGCGGGTGCGCGCGCGCAG
TCAGGCGCTGCTCAAGTACGTGTTGCCGTTTACCCTGCCAGCCATCGTCTGCCTGCCGTTGACCCTTTACGTCAGCCACT
TCATGCCGTCTTCAGTAGGCCGTGCGCTGGCGCTGTGTTTCGCGTATGCAACCAGCAGCGGCATCGTTTCGACCTCGGTG
TTGCTCTGCGTGATCGTGATGTTCAACTTCGGGCACAAGCGTGCCGCCGTGCACATGATTCGCCGCTACGCGCCAAGGCC
ACTGTTCGTGGTCGGCTTTCTGGCGGCGCTGAGCGATGCGTTGACCAGTCCGCAGATCGCCCGTCAGCTCGGCAGTAACG
TCACCACCAGTGTTGCGGTGTTTACCGGGCTGTTCGCCTCGGTAGTGTTTTGCATGCTGATCATCAAGGTGCGTCGCCCG
GTGGCCCACCTGATCCGTAACCGCTCATTGAGCAGTCGCCTGCAACGGCCCGCGCTGCAACAGTCGTTGAAGATATTCTC
CAAGCTGTGGCACCTGCCGATCCTGCTGATGATTCTGGTCTCGGCGATCAACCTCATCGGCGCCGGTGAGGACAGTCAGG
AAGCGCTGCGTTGCGCGTTGTTCACCACTATTCTGCTGATTGCCACGGTGTTCCTCAGCACCGTGTTCCAGCACCTGTTC
AAACCGACGGAAACCCTCGGGCGCGGCGGGCACGTGTATAAGGCGCGCCTGCTGAGCCTGGTGTACGCGGTGTTGCGTAT
CGCACTGGCCATCGGCTTCATCGAGATACTCGGCCGCATCTGGGGCTTCTCGATGTTCGAGTTTGCCCAGCGCAACACCC
TTGGCCGGGTGATCAGTGATTCGTTGAGCAGTATCGGTCTGATCTTCGTCGTCACCTGGCTGTTGTGGGTGGTACTCGAC
ACCGCCATTCAGGAAGCCCTCAAACCGCCGGTCAATCATCGCAGCGGTCGTCAGCCGAGCACTCGGATCAAAACCATTCT
GCCGCTGTTGCGCAATGCGGTGAAAATCATTCTGGTGGTGATCTGTGCGATCACCACCATGGCCAACCTGGGCATCAACG
TGGCACCACTGCTGGCGGGTGCCGGGGTGGTCGGTCTGGCCATCGGTTTCGGTTCGCAGCAACTGGTGCAGGACGTGATC
ACCGGCCTGTTCATCATCATCGAGGACACCTTTTCAGTGGGCGACTGGGTGGTGCTCAGCACGGGCCATTCCGGTACGGT
TGAAAGCCTGACCATCCGTACCGTGCGCCTGCGCGACGGCAAGGGCTTCGTCCATTCGGTGCCGTTCGGCCAGATCAAGG
CGGTCACCAACCAGTCACGGCAATTCGCTTACGCGTTCTTCTCGGTGCGCTTCACCTACGACTCCGACATTGATGATGCG
CTGGCGCTGATTCGCGAAACCGGCCAGTCGATCAGCGAAGACATTCTGCTCAAGCACAACCTTCAGGGGCCGCTGGAAGT
GTTCGGCGTCGATAGCATGGACCTCAACGGCATGGTGCTGACCGCGCAGTTTCGTACCTCTTCGGGCGGGCAGTACGCGG
TAGGGCGTGCTTTCAACGAGCGTCTCAAGCGGCTTGTGGATAAAAATCCGAATGTGCGTTTCGCGCAGACTTATCCACAG
ATGGTCATGGGGCCGGGCTTCAACAATCCGCAGGCTGGCGTCGAAGCCGAAGGCCCACCCGCGCCTTCGGATCCTGCTGC
GGCGACACCTTCTGCACCTGTACCTGCGCCGCCCGGTCTATCCAAGGGCAACAGCACGCCGGGCCCGGCAGCTCAATAA

Upstream 100 bases:

>100_bases
CGAAACCGAACTTGCCGCGCATACGGGAATCAGTTCATTGGGGTCGAGGCTTGCCTTGCCCTGTCCATGGTTTGACTTGC
CCATTGAAGGAGAGAACTGC

Downstream 100 bases:

>100_bases
CTCAACCGGCACGTCAGGACGCTGCAACGCTTTGTCGCGGCGTCATCAACCCGCCAGGCTGCGCAACTGTTGGGGGTTGG
CAGGCAACGTGTTATGTTTG

Product: MscS mechanosensitive ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 772; Mature: 771

Protein sequence:

>772_residues
MASQLKILILSGLLLFAGSFNLQAADVPALPMGAAVPADDKAAEKADPKADSKAADKPAAKADDKAADKDQTDAKPADGA
EPAAEAPELLVQGGLLGAISTSIDDVQEKLNLDDNLFDVWQLRADRAADELEKLVNKRTTRSPWSVAGDFLALSFVWIAS
FAILTTLGRFLAVRLCRTPFMRVRARSQALLKYVLPFTLPAIVCLPLTLYVSHFMPSSVGRALALCFAYATSSGIVSTSV
LLCVIVMFNFGHKRAAVHMIRRYAPRPLFVVGFLAALSDALTSPQIARQLGSNVTTSVAVFTGLFASVVFCMLIIKVRRP
VAHLIRNRSLSSRLQRPALQQSLKIFSKLWHLPILLMILVSAINLIGAGEDSQEALRCALFTTILLIATVFLSTVFQHLF
KPTETLGRGGHVYKARLLSLVYAVLRIALAIGFIEILGRIWGFSMFEFAQRNTLGRVISDSLSSIGLIFVVTWLLWVVLD
TAIQEALKPPVNHRSGRQPSTRIKTILPLLRNAVKIILVVICAITTMANLGINVAPLLAGAGVVGLAIGFGSQQLVQDVI
TGLFIIIEDTFSVGDWVVLSTGHSGTVESLTIRTVRLRDGKGFVHSVPFGQIKAVTNQSRQFAYAFFSVRFTYDSDIDDA
LALIRETGQSISEDILLKHNLQGPLEVFGVDSMDLNGMVLTAQFRTSSGGQYAVGRAFNERLKRLVDKNPNVRFAQTYPQ
MVMGPGFNNPQAGVEAEGPPAPSDPAAATPSAPVPAPPGLSKGNSTPGPAAQ

Sequences:

>Translated_772_residues
MASQLKILILSGLLLFAGSFNLQAADVPALPMGAAVPADDKAAEKADPKADSKAADKPAAKADDKAADKDQTDAKPADGA
EPAAEAPELLVQGGLLGAISTSIDDVQEKLNLDDNLFDVWQLRADRAADELEKLVNKRTTRSPWSVAGDFLALSFVWIAS
FAILTTLGRFLAVRLCRTPFMRVRARSQALLKYVLPFTLPAIVCLPLTLYVSHFMPSSVGRALALCFAYATSSGIVSTSV
LLCVIVMFNFGHKRAAVHMIRRYAPRPLFVVGFLAALSDALTSPQIARQLGSNVTTSVAVFTGLFASVVFCMLIIKVRRP
VAHLIRNRSLSSRLQRPALQQSLKIFSKLWHLPILLMILVSAINLIGAGEDSQEALRCALFTTILLIATVFLSTVFQHLF
KPTETLGRGGHVYKARLLSLVYAVLRIALAIGFIEILGRIWGFSMFEFAQRNTLGRVISDSLSSIGLIFVVTWLLWVVLD
TAIQEALKPPVNHRSGRQPSTRIKTILPLLRNAVKIILVVICAITTMANLGINVAPLLAGAGVVGLAIGFGSQQLVQDVI
TGLFIIIEDTFSVGDWVVLSTGHSGTVESLTIRTVRLRDGKGFVHSVPFGQIKAVTNQSRQFAYAFFSVRFTYDSDIDDA
LALIRETGQSISEDILLKHNLQGPLEVFGVDSMDLNGMVLTAQFRTSSGGQYAVGRAFNERLKRLVDKNPNVRFAQTYPQ
MVMGPGFNNPQAGVEAEGPPAPSDPAAATPSAPVPAPPGLSKGNSTPGPAAQ
>Mature_771_residues
ASQLKILILSGLLLFAGSFNLQAADVPALPMGAAVPADDKAAEKADPKADSKAADKPAAKADDKAADKDQTDAKPADGAE
PAAEAPELLVQGGLLGAISTSIDDVQEKLNLDDNLFDVWQLRADRAADELEKLVNKRTTRSPWSVAGDFLALSFVWIASF
AILTTLGRFLAVRLCRTPFMRVRARSQALLKYVLPFTLPAIVCLPLTLYVSHFMPSSVGRALALCFAYATSSGIVSTSVL
LCVIVMFNFGHKRAAVHMIRRYAPRPLFVVGFLAALSDALTSPQIARQLGSNVTTSVAVFTGLFASVVFCMLIIKVRRPV
AHLIRNRSLSSRLQRPALQQSLKIFSKLWHLPILLMILVSAINLIGAGEDSQEALRCALFTTILLIATVFLSTVFQHLFK
PTETLGRGGHVYKARLLSLVYAVLRIALAIGFIEILGRIWGFSMFEFAQRNTLGRVISDSLSSIGLIFVVTWLLWVVLDT
AIQEALKPPVNHRSGRQPSTRIKTILPLLRNAVKIILVVICAITTMANLGINVAPLLAGAGVVGLAIGFGSQQLVQDVIT
GLFIIIEDTFSVGDWVVLSTGHSGTVESLTIRTVRLRDGKGFVHSVPFGQIKAVTNQSRQFAYAFFSVRFTYDSDIDDAL
ALIRETGQSISEDILLKHNLQGPLEVFGVDSMDLNGMVLTAQFRTSSGGQYAVGRAFNERLKRLVDKNPNVRFAQTYPQM
VMGPGFNNPQAGVEAEGPPAPSDPAAATPSAPVPAPPGLSKGNSTPGPAAQ

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI87081787, Length=477, Percent_Identity=27.2536687631027, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 83188; Mature: 83057

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASQLKILILSGLLLFAGSFNLQAADVPALPMGAAVPADDKAAEKADPKADSKAADKPAA
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
KADDKAADKDQTDAKPADGAEPAAEAPELLVQGGLLGAISTSIDDVQEKLNLDDNLFDVW
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHH
QLRADRAADELEKLVNKRTTRSPWSVAGDFLALSFVWIASFAILTTLGRFLAVRLCRTPF
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRVRARSQALLKYVLPFTLPAIVCLPLTLYVSHFMPSSVGRALALCFAYATSSGIVSTSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHH
LLCVIVMFNFGHKRAAVHMIRRYAPRPLFVVGFLAALSDALTSPQIARQLGSNVTTSVAV
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH
FTGLFASVVFCMLIIKVRRPVAHLIRNRSLSSRLQRPALQQSLKIFSKLWHLPILLMILV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAINLIGAGEDSQEALRCALFTTILLIATVFLSTVFQHLFKPTETLGRGGHVYKARLLSL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHH
VYAVLRIALAIGFIEILGRIWGFSMFEFAQRNTLGRVISDSLSSIGLIFVVTWLLWVVLD
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIQEALKPPVNHRSGRQPSTRIKTILPLLRNAVKIILVVICAITTMANLGINVAPLLAG
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
AGVVGLAIGFGSQQLVQDVITGLFIIIEDTFSVGDWVVLSTGHSGTVESLTIRTVRLRDG
CCHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCEEEEECCCCCCCCEEEEEEEEEECC
KGFVHSVPFGQIKAVTNQSRQFAYAFFSVRFTYDSDIDDALALIRETGQSISEDILLKHN
CCCEECCCCHHHHHHHHCCHHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
LQGPLEVFGVDSMDLNGMVLTAQFRTSSGGQYAVGRAFNERLKRLVDKNPNVRFAQTYPQ
CCCCHHEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCH
MVMGPGFNNPQAGVEAEGPPAPSDPAAATPSAPVPAPPGLSKGNSTPGPAAQ
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASQLKILILSGLLLFAGSFNLQAADVPALPMGAAVPADDKAAEKADPKADSKAADKPAA
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
KADDKAADKDQTDAKPADGAEPAAEAPELLVQGGLLGAISTSIDDVQEKLNLDDNLFDVW
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHH
QLRADRAADELEKLVNKRTTRSPWSVAGDFLALSFVWIASFAILTTLGRFLAVRLCRTPF
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MRVRARSQALLKYVLPFTLPAIVCLPLTLYVSHFMPSSVGRALALCFAYATSSGIVSTSV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHH
LLCVIVMFNFGHKRAAVHMIRRYAPRPLFVVGFLAALSDALTSPQIARQLGSNVTTSVAV
HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH
FTGLFASVVFCMLIIKVRRPVAHLIRNRSLSSRLQRPALQQSLKIFSKLWHLPILLMILV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAINLIGAGEDSQEALRCALFTTILLIATVFLSTVFQHLFKPTETLGRGGHVYKARLLSL
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHH
VYAVLRIALAIGFIEILGRIWGFSMFEFAQRNTLGRVISDSLSSIGLIFVVTWLLWVVLD
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAIQEALKPPVNHRSGRQPSTRIKTILPLLRNAVKIILVVICAITTMANLGINVAPLLAG
HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC
AGVVGLAIGFGSQQLVQDVITGLFIIIEDTFSVGDWVVLSTGHSGTVESLTIRTVRLRDG
CCHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCCCEEEEECCCCCCCCEEEEEEEEEECC
KGFVHSVPFGQIKAVTNQSRQFAYAFFSVRFTYDSDIDDALALIRETGQSISEDILLKHN
CCCEECCCCHHHHHHHHCCHHHEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC
LQGPLEVFGVDSMDLNGMVLTAQFRTSSGGQYAVGRAFNERLKRLVDKNPNVRFAQTYPQ
CCCCHHEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHCCH
MVMGPGFNNPQAGVEAEGPPAPSDPAAATPSAPVPAPPGLSKGNSTPGPAAQ
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]