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The map label for this gene is ompW [H]

Identifier: 66047700

GI number: 66047700

Start: 5333258

End: 5333944

Strand: Direct

Name: ompW [H]

Synonym: Psyr_4473

Alternate gene names: 66047700

Gene position: 5333258-5333944 (Clockwise)

Preceding gene: 66047699

Following gene: 66047705

Centisome position: 87.52

GC content: 61.14

Gene sequence:

>687_bases
ATGCACAAGCATCTGTTACGCGCGTCCCTTGTCGCGCTTGCCCTTACTGCCCCGGTCGCGGCACACGCCTACCAGCCTGG
CGACTTCATCGTTCGCGCCGGTGTCGCGCACGTTCAACCCAATGAAGACAGCGGCGAAGTGCGCCTCGACGGTGCCAAGG
TTTCCGGCACCAAAGCGACTGTCGACGGCGAAAACCAGCTGGGCCTGACCTTCGCCTACATGCTGACCCAGCACGTCGGT
ATCGAGCTGCTGGCCGCCACACCGTTCAGCCATACCGTGTCGGTCAAAGGCCTCGGGCCTGGCCTGGATGGCAAGCTGGC
CGATATCAAACAACTGCCGCCGACGCTGTCGTTGCAGTACTACCCGATGGAACCATCGTCGAAGTTCCAGCCGTATGCCG
GCGTGGGCATCAACTACACCACCTTCTTCGATACCGACCTGACCGGCAACCGCAAGGATCAGGGTTTCAGCAACCTCAAG
CTCAAGGACTCGGTCGGCCTCGCCGGGCAGTTGGGCATGGATTACATGATCACCGACAACGTACTGCTCAACGCCTCGGT
CTGGTACGTCGACATCGACACCAAAGCAACCGTGGACGGCCCGTCAGCCCTGGCCGTCGGCAAGACCAAGGTCGACGTGG
ACATCGACCCGTGGGTGTACATGGTGGGTGTGGGTTACAAGTTCTGA

Upstream 100 bases:

>100_bases
TGACGAGGTTCCCAGCGATTTCATTGAGCTGAGTCAAAGTCGCCGCTCGACAGCGCTTTAACATTACGCCCATAAATTTT
GACTGATCTCTGGAGCCTCC

Downstream 100 bases:

>100_bases
CCTGAACGTCTCAAGCGCCACAAACACAAAGGCACCCTCAGCGGGTGCCTTTGTGTTTTGTAGACCTGATGATCTCGTAC
CAACTCCATGACGAAGTAAT

Product: OmpW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MHKHLLRASLVALALTAPVAAHAYQPGDFIVRAGVAHVQPNEDSGEVRLDGAKVSGTKATVDGENQLGLTFAYMLTQHVG
IELLAATPFSHTVSVKGLGPGLDGKLADIKQLPPTLSLQYYPMEPSSKFQPYAGVGINYTTFFDTDLTGNRKDQGFSNLK
LKDSVGLAGQLGMDYMITDNVLLNASVWYVDIDTKATVDGPSALAVGKTKVDVDIDPWVYMVGVGYKF

Sequences:

>Translated_228_residues
MHKHLLRASLVALALTAPVAAHAYQPGDFIVRAGVAHVQPNEDSGEVRLDGAKVSGTKATVDGENQLGLTFAYMLTQHVG
IELLAATPFSHTVSVKGLGPGLDGKLADIKQLPPTLSLQYYPMEPSSKFQPYAGVGINYTTFFDTDLTGNRKDQGFSNLK
LKDSVGLAGQLGMDYMITDNVLLNASVWYVDIDTKATVDGPSALAVGKTKVDVDIDPWVYMVGVGYKF
>Mature_228_residues
MHKHLLRASLVALALTAPVAAHAYQPGDFIVRAGVAHVQPNEDSGEVRLDGAKVSGTKATVDGENQLGLTFAYMLTQHVG
IELLAATPFSHTVSVKGLGPGLDGKLADIKQLPPTLSLQYYPMEPSSKFQPYAGVGINYTTFFDTDLTGNRKDQGFSNLK
LKDSVGLAGQLGMDYMITDNVLLNASVWYVDIDTKATVDGPSALAVGKTKVDVDIDPWVYMVGVGYKF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=224, Percent_Identity=44.6428571428571, Blast_Score=183, Evalue=8e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 24432; Mature: 24432

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKHLLRASLVALALTAPVAAHAYQPGDFIVRAGVAHVQPNEDSGEVRLDGAKVSGTKAT
CCHHHHHHHHHHHHHHCCHHHHCCCCCCEEEECCEEEECCCCCCCCEEECCEEECCCEEE
VDGENQLGLTFAYMLTQHVGIELLAATPFSHTVSVKGLGPGLDGKLADIKQLPPTLSLQY
ECCCCCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCCEEEE
YPMEPSSKFQPYAGVGINYTTFFDTDLTGNRKDQGFSNLKLKDSVGLAGQLGMDYMITDN
EECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHCCCCEEEECC
VLLNASVWYVDIDTKATVDGPSALAVGKTKVDVDIDPWVYMVGVGYKF
EEEEEEEEEEECCCEEECCCCCEEEECCEEEEEECCCEEEEEEECCCC
>Mature Secondary Structure
MHKHLLRASLVALALTAPVAAHAYQPGDFIVRAGVAHVQPNEDSGEVRLDGAKVSGTKAT
CCHHHHHHHHHHHHHHCCHHHHCCCCCCEEEECCEEEECCCCCCCCEEECCEEECCCEEE
VDGENQLGLTFAYMLTQHVGIELLAATPFSHTVSVKGLGPGLDGKLADIKQLPPTLSLQY
ECCCCCCCHHHHHHHHHHCCEEEEEECCCCCEEEEEECCCCCCCCCHHHHHCCCCCEEEE
YPMEPSSKFQPYAGVGINYTTFFDTDLTGNRKDQGFSNLKLKDSVGLAGQLGMDYMITDN
EECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECCCCCCHHCCCCEEEECC
VLLNASVWYVDIDTKATVDGPSALAVGKTKVDVDIDPWVYMVGVGYKF
EEEEEEEEEEECCCEEECCCCCEEEECCEEEEEECCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]