| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is yvrO [H]
Identifier: 66047697
GI number: 66047697
Start: 5330644
End: 5331354
Strand: Direct
Name: yvrO [H]
Synonym: Psyr_4470
Alternate gene names: 66047697
Gene position: 5330644-5331354 (Clockwise)
Preceding gene: 66047696
Following gene: 66047698
Centisome position: 87.48
GC content: 63.71
Gene sequence:
>711_bases ATGACCCAAGCACTGATCGAACTGTCGGACCTGCGCTTCAACTGGCCCGGCCACCCGCAACTGCTGGACATCCCTGAGTT CCGTCTGCAAAGCGGCGAAACCCTGTTCCTCAAAGGCCCGAGTGGCAGCGGTAAAACCACGCTGCTGGGCCTGCTGGGCG GTGTGCAAAAACCGGTCAGCGGCAGCATTCGCCTGTTGAACCAGGACCTGTCGGCCCTCTCTTCGGCCGCGCGTGATCGC TTTCGCGTCGATCACACCGGCTACATCTTCCAGCAGTTCAACCTGCTGCCGTTTTTGTCGGTGCGGGAAAACATCGAACT GCCCTGCCACTTTTCCAGCGTGCGTGCCGAGCGTGCCAGGCAACGCCACGGCAGCGTCGAGAAAGCGACCGCTACCCTGC TCGCCCACTTGGGTCTGAAAGACCCGGCGATGCTGACACGCCGCGCCGACTCGTTGTCCATCGGCCAGCAACAGCGAGTC GCCGCCGCCCGGGCGCTGATCGGTCAGCCGGAGCTGGTGATTGCCGATGAGCCTACGTCTGCGCTGGACGCGGACTCGCG CGAGGCGTTCATTCGCCTGTTGTTCGCCGAGTGCCGCGAGGCCGGGGCCAGCCTGCTGTTTGTCAGTCATGACCAGAGCC TGGCACCGCTGTTTGATCGCAATCTGTCGCTGAGCGACCTGAATCGCGCCGCCGTCGCCGTGGAGATTTGA
Upstream 100 bases:
>100_bases GATCGCAGCCAACCCGACGCTGAAGTTCTGATCGCACCCTGCGGTACAACGACCGGGCCTGGCCCGGTCTTTTAATTTCC AACCGAGCGTGAGTCAGCCC
Downstream 100 bases:
>100_bases GATGTATCTGTTTCGTCTGGCCATGGCCAGCCTGGCCAACCGCCGTTTCACTGCATTCCTCACTGCCTTCGCCATTGCGC TGTCGGTTTGCCTGTTACTG
Product: ABC transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MTQALIELSDLRFNWPGHPQLLDIPEFRLQSGETLFLKGPSGSGKTTLLGLLGGVQKPVSGSIRLLNQDLSALSSAARDR FRVDHTGYIFQQFNLLPFLSVRENIELPCHFSSVRAERARQRHGSVEKATATLLAHLGLKDPAMLTRRADSLSIGQQQRV AAARALIGQPELVIADEPTSALDADSREAFIRLLFAECREAGASLLFVSHDQSLAPLFDRNLSLSDLNRAAVAVEI
Sequences:
>Translated_236_residues MTQALIELSDLRFNWPGHPQLLDIPEFRLQSGETLFLKGPSGSGKTTLLGLLGGVQKPVSGSIRLLNQDLSALSSAARDR FRVDHTGYIFQQFNLLPFLSVRENIELPCHFSSVRAERARQRHGSVEKATATLLAHLGLKDPAMLTRRADSLSIGQQQRV AAARALIGQPELVIADEPTSALDADSREAFIRLLFAECREAGASLLFVSHDQSLAPLFDRNLSLSDLNRAAVAVEI >Mature_235_residues TQALIELSDLRFNWPGHPQLLDIPEFRLQSGETLFLKGPSGSGKTTLLGLLGGVQKPVSGSIRLLNQDLSALSSAARDRF RVDHTGYIFQQFNLLPFLSVRENIELPCHFSSVRAERARQRHGSVEKATATLLAHLGLKDPAMLTRRADSLSIGQQQRVA AARALIGQPELVIADEPTSALDADSREAFIRLLFAECREAGASLLFVSHDQSLAPLFDRNLSLSDLNRAAVAVEI
Specific function: Unknown
COG id: COG1136
COG function: function code V; ABC-type antimicrobial peptide transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI255708477, Length=226, Percent_Identity=29.2035398230088, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI171184400, Length=215, Percent_Identity=33.4883720930233, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI46592898, Length=233, Percent_Identity=30.4721030042918, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI46592915, Length=233, Percent_Identity=30.4721030042918, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI46592956, Length=233, Percent_Identity=30.4721030042918, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI46592978, Length=233, Percent_Identity=30.4721030042918, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI46592971, Length=233, Percent_Identity=30.4721030042918, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI46592964, Length=233, Percent_Identity=30.4721030042918, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI42741659, Length=215, Percent_Identity=29.3023255813954, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI9961250, Length=215, Percent_Identity=30.2325581395349, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI4505771, Length=215, Percent_Identity=30.2325581395349, Blast_Score=77, Evalue=9e-15, Organism=Homo sapiens, GI9961252, Length=215, Percent_Identity=30.2325581395349, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI27477115, Length=169, Percent_Identity=31.9526627218935, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI27436953, Length=202, Percent_Identity=27.7227722772277, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI156105685, Length=207, Percent_Identity=30.4347826086957, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI9955963, Length=230, Percent_Identity=30, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI9665248, Length=224, Percent_Identity=29.4642857142857, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI153792144, Length=169, Percent_Identity=28.9940828402367, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI21536378, Length=213, Percent_Identity=27.2300469483568, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI11967969, Length=223, Percent_Identity=29.1479820627803, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI6005701, Length=184, Percent_Identity=27.1739130434783, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1786703, Length=202, Percent_Identity=41.5841584158416, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1787105, Length=230, Percent_Identity=35.2173913043478, Blast_Score=128, Evalue=3e-31, Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=38, Blast_Score=124, Evalue=6e-30, Organism=Escherichia coli, GI1788761, Length=229, Percent_Identity=35.8078602620087, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=33.6322869955157, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787089, Length=215, Percent_Identity=36.7441860465116, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787029, Length=227, Percent_Identity=33.0396475770925, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=32.7433628318584, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1786563, Length=208, Percent_Identity=34.6153846153846, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1790544, Length=198, Percent_Identity=37.3737373737374, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1788225, Length=218, Percent_Identity=35.7798165137615, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI87081709, Length=220, Percent_Identity=35.9090909090909, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787712, Length=216, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790467, Length=203, Percent_Identity=32.0197044334975, Blast_Score=95, Evalue=3e-21, Organism=Escherichia coli, GI1786398, Length=196, Percent_Identity=31.6326530612245, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789891, Length=212, Percent_Identity=34.9056603773585, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1789962, Length=226, Percent_Identity=32.7433628318584, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787500, Length=223, Percent_Identity=31.390134529148, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI87082267, Length=209, Percent_Identity=30.622009569378, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI87081782, Length=198, Percent_Identity=31.3131313131313, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789672, Length=216, Percent_Identity=29.6296296296296, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1786319, Length=224, Percent_Identity=28.125, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1786872, Length=206, Percent_Identity=33.9805825242718, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1786253, Length=224, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI87081791, Length=211, Percent_Identity=29.3838862559242, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI48995001, Length=215, Percent_Identity=31.1627906976744, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1789864, Length=223, Percent_Identity=28.6995515695067, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1789032, Length=187, Percent_Identity=31.0160427807487, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1788210, Length=201, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1787758, Length=228, Percent_Identity=30.7017543859649, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788644, Length=225, Percent_Identity=30.6666666666667, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI48994997, Length=230, Percent_Identity=30.4347826086957, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787164, Length=202, Percent_Identity=33.1683168316832, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788450, Length=198, Percent_Identity=32.8282828282828, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1788506, Length=192, Percent_Identity=36.9791666666667, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1787759, Length=224, Percent_Identity=29.0178571428571, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786698, Length=208, Percent_Identity=27.8846153846154, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790190, Length=213, Percent_Identity=27.6995305164319, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1788053, Length=200, Percent_Identity=31, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1790525, Length=196, Percent_Identity=26.0204081632653, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1789963, Length=198, Percent_Identity=29.7979797979798, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI48994943, Length=218, Percent_Identity=29.3577981651376, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI48994883, Length=222, Percent_Identity=31.5315315315315, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI145693107, Length=190, Percent_Identity=34.2105263157895, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1786345, Length=215, Percent_Identity=33.0232558139535, Blast_Score=71, Evalue=7e-14, Organism=Escherichia coli, GI1787547, Length=186, Percent_Identity=29.5698924731183, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1790534, Length=199, Percent_Identity=31.1557788944724, Blast_Score=70, Evalue=9e-14, Organism=Escherichia coli, GI1787548, Length=199, Percent_Identity=30.6532663316583, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1788897, Length=195, Percent_Identity=30.2564102564103, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1789991, Length=208, Percent_Identity=28.3653846153846, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1787112, Length=206, Percent_Identity=31.5533980582524, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71996809, Length=216, Percent_Identity=30.0925925925926, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193211017, Length=216, Percent_Identity=30.0925925925926, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193211015, Length=216, Percent_Identity=30.0925925925926, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17567265, Length=208, Percent_Identity=30.2884615384615, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115534520, Length=198, Percent_Identity=32.3232323232323, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115535101, Length=211, Percent_Identity=29.8578199052133, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17567269, Length=211, Percent_Identity=30.8056872037915, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17558664, Length=193, Percent_Identity=29.5336787564767, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71992290, Length=227, Percent_Identity=28.1938325991189, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115533608, Length=215, Percent_Identity=27.4418604651163, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17541710, Length=208, Percent_Identity=30.2884615384615, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17565938, Length=227, Percent_Identity=30.8370044052863, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533592, Length=207, Percent_Identity=29.4685990338164, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17569145, Length=190, Percent_Identity=28.9473684210526, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=191, Percent_Identity=29.3193717277487, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17565586, Length=182, Percent_Identity=30.2197802197802, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71992285, Length=200, Percent_Identity=29, Blast_Score=65, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646699, Length=214, Percent_Identity=28.9719626168224, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17559834, Length=215, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=194, Percent_Identity=34.020618556701, Blast_Score=86, Evalue=6e-18, Organism=Saccharomyces cerevisiae, GI6323217, Length=191, Percent_Identity=33.5078534031414, Blast_Score=73, Evalue=5e-14, Organism=Saccharomyces cerevisiae, GI6324498, Length=209, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24641565, Length=187, Percent_Identity=34.7593582887701, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI85726357, Length=218, Percent_Identity=30.7339449541284, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI221512771, Length=205, Percent_Identity=27.3170731707317, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI281363262, Length=238, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24653245, Length=238, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24666092, Length=201, Percent_Identity=30.3482587064677, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI85816269, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580553, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85724864, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580555, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28574744, Length=169, Percent_Identity=31.3609467455621, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24659289, Length=216, Percent_Identity=27.7777777777778, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI28574533, Length=196, Percent_Identity=32.6530612244898, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI23397593, Length=186, Percent_Identity=32.7956989247312, Blast_Score=64, Evalue=1e-10,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25835; Mature: 25704
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQALIELSDLRFNWPGHPQLLDIPEFRLQSGETLFLKGPSGSGKTTLLGLLGGVQKPVS CCCHHEEHHHEEECCCCCCCEECCCHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCCC GSIRLLNQDLSALSSAARDRFRVDHTGYIFQQFNLLPFLSVRENIELPCHFSSVRAERAR CHHHHHHHHHHHHHHHHHHHEECCCCHHEEHHCCCCEEEHHHCCCCCCCCHHHHHHHHHH QRHGSVEKATATLLAHLGLKDPAMLTRRADSLSIGQQQRVAAARALIGQPELVIADEPTS HHCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCH ALDADSREAFIRLLFAECREAGASLLFVSHDQSLAPLFDRNLSLSDLNRAAVAVEI HCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCHHHCCCEEEEEEC >Mature Secondary Structure TQALIELSDLRFNWPGHPQLLDIPEFRLQSGETLFLKGPSGSGKTTLLGLLGGVQKPVS CCHHEEHHHEEECCCCCCCEECCCHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCCCC GSIRLLNQDLSALSSAARDRFRVDHTGYIFQQFNLLPFLSVRENIELPCHFSSVRAERAR CHHHHHHHHHHHHHHHHHHHEECCCCHHEEHHCCCCEEEHHHCCCCCCCCHHHHHHHHHH QRHGSVEKATATLLAHLGLKDPAMLTRRADSLSIGQQQRVAAARALIGQPELVIADEPTS HHCCCHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCH ALDADSREAFIRLLFAECREAGASLLFVSHDQSLAPLFDRNLSLSDLNRAAVAVEI HCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHCCCCHHHCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9639930; 9384377 [H]