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The map label for this gene is dinF [H]

Identifier: 66047611

GI number: 66047611

Start: 5241000

End: 5242340

Strand: Reverse

Name: dinF [H]

Synonym: Psyr_4384

Alternate gene names: 66047611

Gene position: 5242340-5241000 (Counterclockwise)

Preceding gene: 66047613

Following gene: 66047604

Centisome position: 86.03

GC content: 64.13

Gene sequence:

>1341_bases
ATGTCTACGTTGCTCACTGACTGGCGTCATCGCTCAACCCATCGTCGTGTCTGGGCGCTGGCGACGCCGATGATTCTGTC
GAATATTTCCGTGCCGCTGGTGGCGCTGGTCGACAGTGCGGTGATCGGTCATTTACCCCACGCCCATCAGTTGGGCGCCG
TGGCGGTGGGCGCGACGCTGTATACCTTTCTCGCCTGGGTCATGGGCTTTCTGCGCATGGGCACCACCGGGTTTGCCGCG
CAGGCGGCAGGGCGCAGTGACAGCGCTGCGTTGCGGCGGATTCTGTTGCAGGGGCTGCTGCTGGCTGTCGGGCTGGCGTT
GTTGCTGGGTGTGATCGCCTTGCCGTTCAGCCATCTGGCGCTGACGATGATGCAGCCGTCTGCCGATCTGCAGCAAATGA
CCCTGGATTTCTTCCATACCCGACTGTTCGGCCTGCCTGCGGCGCTGGCCAGTTATGCGCTGGTCGGCTGGTTTCTGGGT
GCGCAGAACGCTCGGGCGCCACTGGCGATTCTGCTGGTGACCAATGCCGTCAACATCGTGCTCAATCTGTGGTTCGTCAT
GGGGCTGGACTGGGGCGTGGTCGGCTCGGCGCGTGCTTCGGTACTCGCGGAGTGGACCGGCGTGGTGCTCGGTCTGCTGC
TGGCACGCAACACCTTGCGCGCCTGGCCGGGCCGGATTGTCTGGTCGGCCTTGCGGCTGTGGAGCAACTGGCGGCCCTTA
CTGGCCGTCAACCGGGACATCTTTCTGCGCACGCTGGCGCTGCAATCGGTGATGTTTCTGATCACCGTGCAGGGCGCTCG
CCTGGGGGATGCGACGGTTGCCGCCAATGCCTTGCTGCTCAATGGCCTGCTGTTGACTGCCCATGCCCTGGATGGGCTGG
CGCATGCGGTCGAAGCGCTGTGCGGGCATGCCATCGGCGCGCGTGACCGGGATACGTTGCGCCGCTCTCTGGTGGTCGCG
GGGGGCTGGTCACTGATTTCCAGCGTAGTGTTTGCGCTGTTCTTTCTGGTGGCTGGGCAGGGCTTCGTCAGCCTGCAGAC
CGATATCCCGGAAGTGCGCGCCACCGCGATGATGTATCTGCCGTATCTGGCGCTGATGCCATTGTTGGCCGTGTGGAGCT
ACCTGCTGGACGGCCTGTTCATCGGTGCCACCCGTGCGCGGGAAATGCGTAACGCGATGCTGTTCAGCGCAGCGGGCATC
GCGCCATTGGCTTATCTGGCTTCCAGCCACGGCAACCACGCCTTATGGCTGACGTTCCTGGCTTTTACCCTGCTGCGCGG
CCTGAGCCTGGGGACCATTGCCTGGCGGCTGACACGCAGGGACGGCTGGTTCGTTCACTGA

Upstream 100 bases:

>100_bases
CCGCAGCTTTCGAGGCATGAGTACCCTTTCCGGACGTATCGAAACGCTGGGACACCCCGCGTTTGATCTGGCTACAATGC
CCGCCTTGCCGGGAGTTCTC

Downstream 100 bases:

>100_bases
GCCTTTGGCCCGGTCGCGTTCTTTTCGGATGCCGTTTGCGGCGTGTGCCTGACGAACATGTCCACCTCGTCGACCACAGG
GGCCAGACCGCTCAGCAATC

Product: multi anti extrusion protein MatE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MSTLLTDWRHRSTHRRVWALATPMILSNISVPLVALVDSAVIGHLPHAHQLGAVAVGATLYTFLAWVMGFLRMGTTGFAA
QAAGRSDSAALRRILLQGLLLAVGLALLLGVIALPFSHLALTMMQPSADLQQMTLDFFHTRLFGLPAALASYALVGWFLG
AQNARAPLAILLVTNAVNIVLNLWFVMGLDWGVVGSARASVLAEWTGVVLGLLLARNTLRAWPGRIVWSALRLWSNWRPL
LAVNRDIFLRTLALQSVMFLITVQGARLGDATVAANALLLNGLLLTAHALDGLAHAVEALCGHAIGARDRDTLRRSLVVA
GGWSLISSVVFALFFLVAGQGFVSLQTDIPEVRATAMMYLPYLALMPLLAVWSYLLDGLFIGATRAREMRNAMLFSAAGI
APLAYLASSHGNHALWLTFLAFTLLRGLSLGTIAWRLTRRDGWFVH

Sequences:

>Translated_446_residues
MSTLLTDWRHRSTHRRVWALATPMILSNISVPLVALVDSAVIGHLPHAHQLGAVAVGATLYTFLAWVMGFLRMGTTGFAA
QAAGRSDSAALRRILLQGLLLAVGLALLLGVIALPFSHLALTMMQPSADLQQMTLDFFHTRLFGLPAALASYALVGWFLG
AQNARAPLAILLVTNAVNIVLNLWFVMGLDWGVVGSARASVLAEWTGVVLGLLLARNTLRAWPGRIVWSALRLWSNWRPL
LAVNRDIFLRTLALQSVMFLITVQGARLGDATVAANALLLNGLLLTAHALDGLAHAVEALCGHAIGARDRDTLRRSLVVA
GGWSLISSVVFALFFLVAGQGFVSLQTDIPEVRATAMMYLPYLALMPLLAVWSYLLDGLFIGATRAREMRNAMLFSAAGI
APLAYLASSHGNHALWLTFLAFTLLRGLSLGTIAWRLTRRDGWFVH
>Mature_445_residues
STLLTDWRHRSTHRRVWALATPMILSNISVPLVALVDSAVIGHLPHAHQLGAVAVGATLYTFLAWVMGFLRMGTTGFAAQ
AAGRSDSAALRRILLQGLLLAVGLALLLGVIALPFSHLALTMMQPSADLQQMTLDFFHTRLFGLPAALASYALVGWFLGA
QNARAPLAILLVTNAVNIVLNLWFVMGLDWGVVGSARASVLAEWTGVVLGLLLARNTLRAWPGRIVWSALRLWSNWRPLL
AVNRDIFLRTLALQSVMFLITVQGARLGDATVAANALLLNGLLLTAHALDGLAHAVEALCGHAIGARDRDTLRRSLVVAG
GWSLISSVVFALFFLVAGQGFVSLQTDIPEVRATAMMYLPYLALMPLLAVWSYLLDGLFIGATRAREMRNAMLFSAAGIA
PLAYLASSHGNHALWLTFLAFTLLRGLSLGTIAWRLTRRDGWFVH

Specific function: Unknown

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family [H]

Homologues:

Organism=Escherichia coli, GI1790477, Length=436, Percent_Identity=47.0183486238532, Blast_Score=291, Evalue=6e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528 [H]

Pfam domain/function: PF01554 MatE [H]

EC number: NA

Molecular weight: Translated: 48288; Mature: 48157

Theoretical pI: Translated: 11.80; Mature: 11.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLLTDWRHRSTHRRVWALATPMILSNISVPLVALVDSAVIGHLPHAHQLGAVAVGATL
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
YTFLAWVMGFLRMGTTGFAAQAAGRSDSAALRRILLQGLLLAVGLALLLGVIALPFSHLA
HHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMMQPSADLQQMTLDFFHTRLFGLPAALASYALVGWFLGAQNARAPLAILLVTNAVNIV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHH
LNLWFVMGLDWGVVGSARASVLAEWTGVVLGLLLARNTLRAWPGRIVWSALRLWSNWRPL
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCH
LAVNRDIFLRTLALQSVMFLITVQGARLGDATVAANALLLNGLLLTAHALDGLAHAVEAL
HHCCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGHAIGARDRDTLRRSLVVAGGWSLISSVVFALFFLVAGQGFVSLQTDIPEVRATAMMYL
HHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHH
PYLALMPLLAVWSYLLDGLFIGATRAREMRNAMLFSAAGIAPLAYLASSHGNHALWLTFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHH
AFTLLRGLSLGTIAWRLTRRDGWFVH
HHHHHHCCCHHHHHEEEECCCCCCCC
>Mature Secondary Structure 
STLLTDWRHRSTHRRVWALATPMILSNISVPLVALVDSAVIGHLPHAHQLGAVAVGATL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
YTFLAWVMGFLRMGTTGFAAQAAGRSDSAALRRILLQGLLLAVGLALLLGVIALPFSHLA
HHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMMQPSADLQQMTLDFFHTRLFGLPAALASYALVGWFLGAQNARAPLAILLVTNAVNIV
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHH
LNLWFVMGLDWGVVGSARASVLAEWTGVVLGLLLARNTLRAWPGRIVWSALRLWSNWRPL
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCH
LAVNRDIFLRTLALQSVMFLITVQGARLGDATVAANALLLNGLLLTAHALDGLAHAVEAL
HHCCHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CGHAIGARDRDTLRRSLVVAGGWSLISSVVFALFFLVAGQGFVSLQTDIPEVRATAMMYL
HHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHH
PYLALMPLLAVWSYLLDGLFIGATRAREMRNAMLFSAAGIAPLAYLASSHGNHALWLTFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHH
AFTLLRGLSLGTIAWRLTRRDGWFVH
HHHHHHCCCHHHHHEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]