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The map label for this gene is lrpC [H]

Identifier: 66047526

GI number: 66047526

Start: 5126309

End: 5126776

Strand: Direct

Name: lrpC [H]

Synonym: Psyr_4299

Alternate gene names: 66047526

Gene position: 5126309-5126776 (Clockwise)

Preceding gene: 66047523

Following gene: 66047530

Centisome position: 84.12

GC content: 58.33

Gene sequence:

>468_bases
ATGATTCTGGATAAATACGATCGGATTCTGCTCGATGAGCTGCTGAAAAATGGCCGGGCGTCTTTTGCGCAGCTGGCGAA
ACTGGTCAACCTGTCCGCGCCCGCGGTGGCCGAGCGGGTCGCCAAGCTAGAGGCCAGTGGCGTGATTACCGGTTACGAAG
CGAAGGTCGACCTGGCGAAAGTCGGGCTGCCGATTCAATGCATCATCGAACTGCGCATGGGCAGCCATGGCAATCAGCAG
GCCTACAAGGAACTGTGGAAAGTCCCCGAGCTGATCCAGTGTTACCGGGTGACGGGCGACCCGTGCGTAATCATGCGCGC
AGCGGTCGATTCGATGCCGCATCTGGAAGACCTGATCAACCGGATCGCCAAGTTTGGCTTCAGCAAGACATCAATCGTGC
TGTCGACAGCCGTGGAGCGCAGCCTGCCGAGCGATTACTTGATCAGCAACGGCAAGCAGGAGCACTGA

Upstream 100 bases:

>100_bases
ACAAACCTGTTTAAAACGCGCTGAAACTTACGATTCGATGCTTGTACGGCCTGCTTTCCTTTTATTTTGAAATAGCCCAT
CGCACGCTACGAGGCACGCC

Downstream 100 bases:

>100_bases
CAGGTCAGACGCCGCGCTGGCGCTTCAGGGTTTCACTGATCTTCGCGGCCGGGACTTTCTGCAGGGAACACAGCATCTGG
TGGGAGATGGCAGAGATGCC

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MILDKYDRILLDELLKNGRASFAQLAKLVNLSAPAVAERVAKLEASGVITGYEAKVDLAKVGLPIQCIIELRMGSHGNQQ
AYKELWKVPELIQCYRVTGDPCVIMRAAVDSMPHLEDLINRIAKFGFSKTSIVLSTAVERSLPSDYLISNGKQEH

Sequences:

>Translated_155_residues
MILDKYDRILLDELLKNGRASFAQLAKLVNLSAPAVAERVAKLEASGVITGYEAKVDLAKVGLPIQCIIELRMGSHGNQQ
AYKELWKVPELIQCYRVTGDPCVIMRAAVDSMPHLEDLINRIAKFGFSKTSIVLSTAVERSLPSDYLISNGKQEH
>Mature_155_residues
MILDKYDRILLDELLKNGRASFAQLAKLVNLSAPAVAERVAKLEASGVITGYEAKVDLAKVGLPIQCIIELRMGSHGNQQ
AYKELWKVPELIQCYRVTGDPCVIMRAAVDSMPHLEDLINRIAKFGFSKTSIVLSTAVERSLPSDYLISNGKQEH

Specific function: Transcriptional regulator with a possible role in regulation of amino acid metabolism. Plays a role in the growth phase transition [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=148, Percent_Identity=27.7027027027027, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR000835
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17140; Mature: 17140

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILDKYDRILLDELLKNGRASFAQLAKLVNLSAPAVAERVAKLEASGVITGYEAKVDLAK
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCHHHHHH
VGLPIQCIIELRMGSHGNQQAYKELWKVPELIQCYRVTGDPCVIMRAAVDSMPHLEDLIN
HCCCHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
RIAKFGFSKTSIVLSTAVERSLPSDYLISNGKQEH
HHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCC
>Mature Secondary Structure
MILDKYDRILLDELLKNGRASFAQLAKLVNLSAPAVAERVAKLEASGVITGYEAKVDLAK
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCHHHHHH
VGLPIQCIIELRMGSHGNQQAYKELWKVPELIQCYRVTGDPCVIMRAAVDSMPHLEDLIN
HCCCHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHH
RIAKFGFSKTSIVLSTAVERSLPSDYLISNGKQEH
HHHHCCCCHHHHHHHHHHHHCCCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9341680 [H]