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The map label for this gene is ypfJ [H]

Identifier: 66047516

GI number: 66047516

Start: 5115850

End: 5116740

Strand: Direct

Name: ypfJ [H]

Synonym: Psyr_4289

Alternate gene names: 66047516

Gene position: 5115850-5116740 (Clockwise)

Preceding gene: 66047515

Following gene: 66047517

Centisome position: 83.95

GC content: 61.28

Gene sequence:

>891_bases
ATGCTCTGGAAAAAAGGCCGACGCAGCGACAACGTAGTCGATGCGCGCGATGGCGGCAGCAGTGGTGGCGGCGGTGGCAT
GCGCATCGGCGGCAAGGGGCTGGGTCTGGGCGGCATCGTGATCATCGTCGCCATCGGCCTGCTGACCGGCCAGGACCCGA
TGCAGATTCTCGGACAACTGACCGGACAAGTGACCGAGCAAAGCGCCCCACCCAGCGCGCAAACGCGTGAGGCCCCACCG
GCCAACGACCAGCAGGCCGAATTCGTGCGCAGCATCCTTGGCGATACCGAGGACACCTGGCGTGCCGTGTTCGCCCAGAA
CGGTCGCGAATACAAGGACCCCACGCTGGTGTTGTTCAGCGGCCAGGTGAACTCGGCCTGCGGTCGCGCTACGTCGGCAA
CCGGTCCGTTCTATTGCCCGGCTGACCAGCAGGTCTATCTGGACATGGAGTTCTTCCGTGAAATGGCCCAGCGCTTTTCC
GCCGCTGGCGACTTCGCCCAGGCTTACGTGATCGCCCATGAAGTCGGGCACCATGTGCAGACCCTGCTGGGCATTTCCGC
CAAGGTCGACAAGGCTCGCCAGGCCGGGCAAAAAATGGAAGGAGCCAACGGTTTACTGGTCCGCCAGGAGCTGCAAGCGG
ACTGCTTTGCCGGTGTTTGGGCGTACAACGCACAAAATCGTTTGAACTGGCTCGAGCCGGGTGATATTGAAGAAGCATTG
AACGCGGCCAACGCTATCGGCGATGATCGCTTGCAACAGCAAAGCAGTGGTCGAGTCGCTCCGGACTCCTTCACTCACGG
CACGTCTGCACAGCGTGTACGCTGGTTCAAGGCAGGCTTTGCCCAAGGTCAAATCAATCAATGCGATACATTCGCCGCCA
AGAGTCTCTGA

Upstream 100 bases:

>100_bases
ACCCTCGCATTCTGCACACGACGCTGGCCGGAACACGCCGGACTGGCGCATTCGCGTATCAGCAGCGAAACTAATTGCAC
GAAAAGAAGAGGGATCCGAC

Downstream 100 bases:

>100_bases
GCACATGATTAAACCGCTTCTGGTCCTGTTGTTGAGCACTGCCTTCGTGAGCCTCGGGGCGCATGCCGAGGATCAAGCGG
TCAATTCCATCAGCCCGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MLWKKGRRSDNVVDARDGGSSGGGGGMRIGGKGLGLGGIVIIVAIGLLTGQDPMQILGQLTGQVTEQSAPPSAQTREAPP
ANDQQAEFVRSILGDTEDTWRAVFAQNGREYKDPTLVLFSGQVNSACGRATSATGPFYCPADQQVYLDMEFFREMAQRFS
AAGDFAQAYVIAHEVGHHVQTLLGISAKVDKARQAGQKMEGANGLLVRQELQADCFAGVWAYNAQNRLNWLEPGDIEEAL
NAANAIGDDRLQQQSSGRVAPDSFTHGTSAQRVRWFKAGFAQGQINQCDTFAAKSL

Sequences:

>Translated_296_residues
MLWKKGRRSDNVVDARDGGSSGGGGGMRIGGKGLGLGGIVIIVAIGLLTGQDPMQILGQLTGQVTEQSAPPSAQTREAPP
ANDQQAEFVRSILGDTEDTWRAVFAQNGREYKDPTLVLFSGQVNSACGRATSATGPFYCPADQQVYLDMEFFREMAQRFS
AAGDFAQAYVIAHEVGHHVQTLLGISAKVDKARQAGQKMEGANGLLVRQELQADCFAGVWAYNAQNRLNWLEPGDIEEAL
NAANAIGDDRLQQQSSGRVAPDSFTHGTSAQRVRWFKAGFAQGQINQCDTFAAKSL
>Mature_296_residues
MLWKKGRRSDNVVDARDGGSSGGGGGMRIGGKGLGLGGIVIIVAIGLLTGQDPMQILGQLTGQVTEQSAPPSAQTREAPP
ANDQQAEFVRSILGDTEDTWRAVFAQNGREYKDPTLVLFSGQVNSACGRATSATGPFYCPADQQVYLDMEFFREMAQRFS
AAGDFAQAYVIAHEVGHHVQTLLGISAKVDKARQAGQKMEGANGLLVRQELQADCFAGVWAYNAQNRLNWLEPGDIEEAL
NAANAIGDDRLQQQSSGRVAPDSFTHGTSAQRVRWFKAGFAQGQINQCDTFAAKSL

Specific function: Unknown

COG id: COG2321

COG function: function code R; Predicted metalloprotease

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788819, Length=291, Percent_Identity=49.8281786941581, Blast_Score=267, Evalue=5e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007343 [H]

Pfam domain/function: PF04228 Zn_peptidase [H]

EC number: NA

Molecular weight: Translated: 31738; Mature: 31738

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWKKGRRSDNVVDARDGGSSGGGGGMRIGGKGLGLGGIVIIVAIGLLTGQDPMQILGQL
CCCCCCCCCCCCEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
TGQVTEQSAPPSAQTREAPPANDQQAEFVRSILGDTEDTWRAVFAQNGREYKDPTLVLFS
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEE
GQVNSACGRATSATGPFYCPADQQVYLDMEFFREMAQRFSAAGDFAQAYVIAHEVGHHVQ
CCCCHHHCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TLLGISAKVDKARQAGQKMEGANGLLVRQELQADCFAGVWAYNAQNRLNWLEPGDIEEAL
HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHH
NAANAIGDDRLQQQSSGRVAPDSFTHGTSAQRVRWFKAGFAQGQINQCDTFAAKSL
HHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MLWKKGRRSDNVVDARDGGSSGGGGGMRIGGKGLGLGGIVIIVAIGLLTGQDPMQILGQL
CCCCCCCCCCCCEECCCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
TGQVTEQSAPPSAQTREAPPANDQQAEFVRSILGDTEDTWRAVFAQNGREYKDPTLVLFS
HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEE
GQVNSACGRATSATGPFYCPADQQVYLDMEFFREMAQRFSAAGDFAQAYVIAHEVGHHVQ
CCCCHHHCCCCCCCCCEECCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TLLGISAKVDKARQAGQKMEGANGLLVRQELQADCFAGVWAYNAQNRLNWLEPGDIEEAL
HHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHH
NAANAIGDDRLQQQSSGRVAPDSFTHGTSAQRVRWFKAGFAQGQINQCDTFAAKSL
HHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]