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The map label for this gene is sdiA [H]

Identifier: 66047505

GI number: 66047505

Start: 5102827

End: 5103060

Strand: Direct

Name: sdiA [H]

Synonym: Psyr_4278

Alternate gene names: 66047505

Gene position: 5102827-5103060 (Clockwise)

Preceding gene: 66047503

Following gene: 66047506

Centisome position: 83.74

GC content: 51.71

Gene sequence:

>234_bases
ATGAACACAATGGACATAAATTTCTCACAGCCCTCGCCAGCAAAAAACCTGACTCAGAGAGAAATCGAAGTCCTCAAGTG
GTCCGCCGAAGGCAAAACAGCTGGCGACATCGCAATGATCCTCTGCCTGAAGGAACGCACCATTCACTTCCACATTGCCA
GTGCCATTCAAAAAATGGGCGTTTGCAACAAGACGGCTGCCGCCGTACAAGCCGCGCTCAGCGGGATGTTCTGA

Upstream 100 bases:

>100_bases
ATCCGTCCGGCTGATCCGCAGCCCGACGGATTGCGGTCTATTTGTTCCTAGACTGGATAAACACCCAGCAAGGTCTGTAC
ACGTACTGCAAGGAGGCTAC

Downstream 100 bases:

>100_bases
CAAACGGGCAATCACCGCGTAATCAGACAGGTATCGAAACGAAAAAATACGTAAAATCGTTTGTCTCAGCGAGCCCACCT
GTCATCGGGCTCACTGACAT

Product: regulatory protein, LuxR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 77; Mature: 77

Protein sequence:

>77_residues
MNTMDINFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSGMF

Sequences:

>Translated_77_residues
MNTMDINFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSGMF
>Mature_77_residues
MNTMDINFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAVQAALSGMF

Specific function: Activates cell division by specifically increasing transcription from one of the two promoters that lie immediately upstream of the ftsQAZ gene cluster. Activates ydiV expression in response to extracellular autoinducer AI-1 (Vibrio fischeri autoinducer o

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788224, Length=65, Percent_Identity=44.6153846153846, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR005143
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03472 Autoind_bind; PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 8380; Mature: 8380

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
6.5 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
6.5 %Met     (Mature Protein)
9.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTMDINFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG
CCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEEECCCEEEHHHHHHHHHCC
VCNKTAAAVQAALSGMF
CCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTMDINFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMG
CCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEEECCCEEEHHHHHHHHHCC
VCNKTAAAVQAALSGMF
CCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3515318; 9097040; 9278503; 1915297 [H]