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The map label for this gene is opuCC [H]

Identifier: 66047478

GI number: 66047478

Start: 5068387

End: 5069280

Strand: Reverse

Name: opuCC [H]

Synonym: Psyr_4251

Alternate gene names: 66047478

Gene position: 5069280-5068387 (Counterclockwise)

Preceding gene: 66047479

Following gene: 66047477

Centisome position: 83.19

GC content: 56.82

Gene sequence:

>894_bases
ATGAAAAGAATATGCTTGTTTTTAGGCTTTGCCTTGCTGTTTCCGGCATTGGCCCAGGCTGCGGAAAAGCCGCTGTTACG
TGTCGGCGCACGGGTGTTCACCGAACAGACCATGCTTGCCGAACTGACTGCGCAATACCTGCGGACCAAGAACTACGACG
TGCAGATTACCGGCGGTCTTGGCAGCAACCTGGCGCGCAGCGCTCAGGAAAGCGGTCAGCTGGATCTGCTGTGGGAATAC
ACCGGTGTGTCGCTGGTGGCCTACAACCATATCGATGAAAAACTCGACAGCGCCCAGACCTATGCGCGGGTGAAAGAAGT
GGATGCGAAGAAAGGCCTGGTCTGGCTTTCTCCGTCGAAGTTCAACAACACCTACGCGCTGGCACTGCCGCAAAAAGTGG
CTGACAAGTACCCGCAGGTCAACACCATGACCGACCTGACCAAAGTGCTCAAGGACGAAGCCAAAGAGGGTCATGTCGTA
GCGCTGGACACCGAGTTTGCCAACCGTTCCGACGGGCTGATCGGCATGGTCAAGCACTACGACATGAATCTCGGTCGTGA
AAACACCCGGCAGATGGACGCCGGGCTGGTCTACACCGCGTTGCGCAACGGTCAGGTTTTTGCCGGTCTGGTGTACACCA
CCGACGGTCGTCTGAATGCGTTCAAACTGAAAGTGCTGGAAGACGACAAGCACTACTTCCCGGACTACACCGCGGCGCCG
GTGATCCGTCAGGAATATCTGGATAAGCATCCGGACATCGCCACGCTGCTCAAGCCGCTGGCTGACCTGCTGGACAACCA
GACCATGATCGACCTCAACGCTCGCGTCGACGTCGGCCATGAAAGCCCATCCGTTGTTGCCGCAGATTTTCTGCGCCAGC
ATCCATTGAACTAA

Upstream 100 bases:

>100_bases
CGTGTACCGCTCTGCTGGCGCTGCTGCTCGATGGTCTGGTGACACTGGCCAGTCGTCTTTGGCTGGAACGCGGACTGGCT
CGCTGAGCGAAGGAATCCTC

Downstream 100 bases:

>100_bases
GGAAGGAGACGATATGAGTTTCTTGAGCGCCTTCTCCCATCTGGACTGGGCACAGGTCCTGCAACTGACCTGGCAGCACA
TCACGCTGGTCGGCATCGCC

Product: substrate-binding region of ABC-type glycine betaine transport system

Products: NA

Alternate protein names: Osmoprotectant-binding protein [H]

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKRICLFLGFALLFPALAQAAEKPLLRVGARVFTEQTMLAELTAQYLRTKNYDVQITGGLGSNLARSAQESGQLDLLWEY
TGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLSPSKFNNTYALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHVV
ALDTEFANRSDGLIGMVKHYDMNLGRENTRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLEDDKHYFPDYTAAP
VIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSVVAADFLRQHPLN

Sequences:

>Translated_297_residues
MKRICLFLGFALLFPALAQAAEKPLLRVGARVFTEQTMLAELTAQYLRTKNYDVQITGGLGSNLARSAQESGQLDLLWEY
TGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLSPSKFNNTYALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHVV
ALDTEFANRSDGLIGMVKHYDMNLGRENTRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLEDDKHYFPDYTAAP
VIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSVVAADFLRQHPLN
>Mature_297_residues
MKRICLFLGFALLFPALAQAAEKPLLRVGARVFTEQTMLAELTAQYLRTKNYDVQITGGLGSNLARSAQESGQLDLLWEY
TGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLSPSKFNNTYALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHVV
ALDTEFANRSDGLIGMVKHYDMNLGRENTRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLEDDKHYFPDYTAAP
VIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSVVAADFLRQHPLN

Specific function: Member of a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine, and choline [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788452, Length=308, Percent_Identity=30.8441558441558, Blast_Score=125, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007210 [H]

Pfam domain/function: PF04069 OpuAC [H]

EC number: NA

Molecular weight: Translated: 33178; Mature: 33178

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRICLFLGFALLFPALAQAAEKPLLRVGARVFTEQTMLAELTAQYLRTKNYDVQITGGL
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
GSNLARSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLSPSK
CCHHHHHHHHCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
FNNTYALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHVVALDTEFANRSDGLIGMVKHY
CCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEHH
DMNLGRENTRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLEDDKHYFPDYTAAP
CCCCCCCHHHHHHCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCH
VIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSVVAADFLRQHPLN
HHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECEEECCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKRICLFLGFALLFPALAQAAEKPLLRVGARVFTEQTMLAELTAQYLRTKNYDVQITGGL
CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC
GSNLARSAQESGQLDLLWEYTGVSLVAYNHIDEKLDSAQTYARVKEVDAKKGLVWLSPSK
CCHHHHHHHHCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCC
FNNTYALALPQKVADKYPQVNTMTDLTKVLKDEAKEGHVVALDTEFANRSDGLIGMVKHY
CCCEEEEECCHHHHHCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEEEHH
DMNLGRENTRQMDAGLVYTALRNGQVFAGLVYTTDGRLNAFKLKVLEDDKHYFPDYTAAP
CCCCCCCHHHHHHCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCH
VIRQEYLDKHPDIATLLKPLADLLDNQTMIDLNARVDVGHESPSVVAADFLRQHPLN
HHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEECEEECCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]