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The map label for this gene is yciR [C]

Identifier: 66047448

GI number: 66047448

Start: 5027082

End: 5028905

Strand: Direct

Name: yciR [C]

Synonym: Psyr_4221

Alternate gene names: 66047448

Gene position: 5027082-5028905 (Clockwise)

Preceding gene: 66047446

Following gene: 66047449

Centisome position: 82.5

GC content: 60.53

Gene sequence:

>1824_bases
ATGAACGCCAGTGCCCCCATCCCTCTGAATGAAACGCAACGTCTGTTGCGCATCCGGGAACTGTGCGTGCTTGAGGATAC
GTCCGATGACGTATTCGATGAACTCGTCGCGATGACCGCTGCTTTTTTCGAGGCGCCGATTGCCTTGATCTCGATCGTCG
ATGAGCACCGTCAGTTTTTCCGCGCCAGGGTGGGCCTGAAAGCTCGTGAAACGCCACGTAACGTGTCCTTTTGCGCCTAC
ACCATCCTTTCCGACACGCTGTTCGAGATTCCCGACGCGACGCTTGATGCGCGCTTCGTGAACAACGGCCTGGTGACCGG
CCACCCAGACATCCGCTACTACGCAGGCGCGCCACTGATCACCGATGATGGCATTGCCCTGGGCAGCCTGTGTGTGATCG
ACACCAAGCCGCGCGAGCCGATGAGCGAATACCAGACGCAGATGCTCAAGCGCTTTGCGTCGCTGGTCATGAAGCGCATC
GTCGGCCTCAGGCTCAGTTGCTTCATCGACCAGCCCACCGGCTTGTACAACCGTTCACGCCTGCAGGAAGATATTCATCA
GGCAGTGGCATCCAGTGTCGATTATCAACTGGTCGTGGTGGACATGATTACCTCCGCGTTCCTCAACGACATCGTCAAGG
CGCTGGGTTACAGCTTCTCCCAGGACCTGGTGACGGCAATCAAGGGCCGCCTGGAGTGCCTGCTGCCGCCGACCTGTTCC
CTGTACAAGGTCAGCCCTACGCGATTCGGCTTTCTGTTGGCGGGCGACCGCACGCCTGAGCACCTGTTTCGCACCATCCT
CAAAGACTTCGAGACACCCGTTGAGTGCCGGGGTATTCCGGTACAGATGCAGGTCGGTCTGGGCGTCGTGACCCTGAACC
AGGGTGCAGTCGAAGAGCAGGACTGGATGCGCATGGTGATCAGCGCTGCCGACGATGCCCGCGACCGCGATCTCGGCTGG
GCGATGTATGAACCGCACTTCGACGCTGCCCAGCAGCGCGCTTTCAAACTGCTCAGTTCGTTGACCAGAGCGGTGTACGC
TCATGATCAACTGCGTCTGGTCTATCAACCGCGCATCGACCTCGACTCCGGCCTGTGTACGTCGGTAGAGGCCTTGCTGC
GCTGGAATCACCCGACGCTCGGCGCCATCGGACCGGCCGAGTTCGTGCCGCTGGCCGAGAAGACCGCACTGATGCGCCCG
CTGAGCCTTTGGGTGCTGACCAGTGCCATCGAGCAGGCCGCTCGTTGGCAGCAGCAGGGCTTCGATTTCCGTATTGCGAT
CAACGTGACGCCCGAAGACCTCACCGGCCCGGCGTTCACCGACCGGATGATCCGCCTGCTGGGCATGCACAAGATAGACC
CTACCCGCTTTGAGCTGGAGTTCACCGAAGGCGCGTTGATGCACAACCCGGCAGAGGTGCGCCATCAGCTGGAGCGCATG
CGTCAGATGGGCATGGATGTGGCGATCGATGACTTCGGTACGGGCTACAGCAACTGGAATTACCTGCGGCAGCTGCCCGC
GACGACGGTCAAGCTCGACCAGTCGCTGATCCGCAATCTGGCGTCCGACAAGACCGATCAGCGTCTGGTCAAGGCATTGA
TCGGTCTGGCCAAGAAACTCGGATACTGCGTCGTGGCCGAGGGCATCGAAACCGATGAGATTCGTTGTCTGGTCAAGCAA
TGGGGCTGCGATGAGGGTCAGGGCTACCTGATCGCCAAACCCATGGAAGCCGAGGCGCTGCTGAACTGGATCGGCCCGAA
CCAACGCCTGCAGAGTGCTGCCCAAGCCGCAGAGGCGGCAGTCGTCCGCGACAAACGGTTATAA

Upstream 100 bases:

>100_bases
ATTAATTGGGATCTCGCCGCTGTGGTCGGAATCTTTTCGTCTGTTAAAGTGAGTTTCGTGATGTCATATAGTCATCATCG
AGTACCCATTGAGAATCGTC

Downstream 100 bases:

>100_bases
CCTTAGAACACATCTTCATAACCGTTTACCACACAAGCCGTTATGCTGCCCGCCACTTTTTGCCTATGCGTTTGCTTGAA
AAAGGTTGGATATGGAAGCG

Product: EAL:GAF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 607; Mature: 607

Protein sequence:

>607_residues
MNASAPIPLNETQRLLRIRELCVLEDTSDDVFDELVAMTAAFFEAPIALISIVDEHRQFFRARVGLKARETPRNVSFCAY
TILSDTLFEIPDATLDARFVNNGLVTGHPDIRYYAGAPLITDDGIALGSLCVIDTKPREPMSEYQTQMLKRFASLVMKRI
VGLRLSCFIDQPTGLYNRSRLQEDIHQAVASSVDYQLVVVDMITSAFLNDIVKALGYSFSQDLVTAIKGRLECLLPPTCS
LYKVSPTRFGFLLAGDRTPEHLFRTILKDFETPVECRGIPVQMQVGLGVVTLNQGAVEEQDWMRMVISAADDARDRDLGW
AMYEPHFDAAQQRAFKLLSSLTRAVYAHDQLRLVYQPRIDLDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMRP
LSLWVLTSAIEQAARWQQQGFDFRIAINVTPEDLTGPAFTDRMIRLLGMHKIDPTRFELEFTEGALMHNPAEVRHQLERM
RQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLIRNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRCLVKQ
WGCDEGQGYLIAKPMEAEALLNWIGPNQRLQSAAQAAEAAVVRDKRL

Sequences:

>Translated_607_residues
MNASAPIPLNETQRLLRIRELCVLEDTSDDVFDELVAMTAAFFEAPIALISIVDEHRQFFRARVGLKARETPRNVSFCAY
TILSDTLFEIPDATLDARFVNNGLVTGHPDIRYYAGAPLITDDGIALGSLCVIDTKPREPMSEYQTQMLKRFASLVMKRI
VGLRLSCFIDQPTGLYNRSRLQEDIHQAVASSVDYQLVVVDMITSAFLNDIVKALGYSFSQDLVTAIKGRLECLLPPTCS
LYKVSPTRFGFLLAGDRTPEHLFRTILKDFETPVECRGIPVQMQVGLGVVTLNQGAVEEQDWMRMVISAADDARDRDLGW
AMYEPHFDAAQQRAFKLLSSLTRAVYAHDQLRLVYQPRIDLDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMRP
LSLWVLTSAIEQAARWQQQGFDFRIAINVTPEDLTGPAFTDRMIRLLGMHKIDPTRFELEFTEGALMHNPAEVRHQLERM
RQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLIRNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRCLVKQ
WGCDEGQGYLIAKPMEAEALLNWIGPNQRLQSAAQAAEAAVVRDKRL
>Mature_607_residues
MNASAPIPLNETQRLLRIRELCVLEDTSDDVFDELVAMTAAFFEAPIALISIVDEHRQFFRARVGLKARETPRNVSFCAY
TILSDTLFEIPDATLDARFVNNGLVTGHPDIRYYAGAPLITDDGIALGSLCVIDTKPREPMSEYQTQMLKRFASLVMKRI
VGLRLSCFIDQPTGLYNRSRLQEDIHQAVASSVDYQLVVVDMITSAFLNDIVKALGYSFSQDLVTAIKGRLECLLPPTCS
LYKVSPTRFGFLLAGDRTPEHLFRTILKDFETPVECRGIPVQMQVGLGVVTLNQGAVEEQDWMRMVISAADDARDRDLGW
AMYEPHFDAAQQRAFKLLSSLTRAVYAHDQLRLVYQPRIDLDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMRP
LSLWVLTSAIEQAARWQQQGFDFRIAINVTPEDLTGPAFTDRMIRLLGMHKIDPTRFELEFTEGALMHNPAEVRHQLERM
RQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLIRNLASDKTDQRLVKALIGLAKKLGYCVVAEGIETDEIRCLVKQ
WGCDEGQGYLIAKPMEAEALLNWIGPNQRLQSAAQAAEAAVVRDKRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=28.3372365339578, Blast_Score=176, Evalue=3e-45,
Organism=Escherichia coli, GI87081921, Length=424, Percent_Identity=26.8867924528302, Blast_Score=175, Evalue=9e-45,
Organism=Escherichia coli, GI226510982, Length=413, Percent_Identity=27.3607748184019, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=32.2448979591837, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI87081743, Length=229, Percent_Identity=32.3144104803493, Blast_Score=128, Evalue=9e-31,
Organism=Escherichia coli, GI1788849, Length=391, Percent_Identity=27.6214833759591, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI87081845, Length=222, Percent_Identity=32.4324324324324, Blast_Score=123, Evalue=4e-29,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=32.7868852459016, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1787055, Length=229, Percent_Identity=28.82096069869, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1786507, Length=231, Percent_Identity=30.3030303030303, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=29.1139240506329, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI87082096, Length=194, Percent_Identity=31.9587628865979, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI1787410, Length=224, Percent_Identity=24.5535714285714, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 68103; Mature: 68103

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNASAPIPLNETQRLLRIRELCVLEDTSDDVFDELVAMTAAFFEAPIALISIVDEHRQFF
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RARVGLKARETPRNVSFCAYTILSDTLFEIPDATLDARFVNNGLVTGHPDIRYYAGAPLI
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCCEECCCCEEEECCCCEE
TDDGIALGSLCVIDTKPREPMSEYQTQMLKRFASLVMKRIVGLRLSCFIDQPTGLYNRSR
ECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHH
LQEDIHQAVASSVDYQLVVVDMITSAFLNDIVKALGYSFSQDLVTAIKGRLECLLPPTCS
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCCCCC
LYKVSPTRFGFLLAGDRTPEHLFRTILKDFETPVECRGIPVQMQVGLGVVTLNQGAVEEQ
EEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHCCCCEEEECCCEEEEECCCCCCHH
DWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLSSLTRAVYAHDQLRLVYQPRID
HHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
LDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMRPLSLWVLTSAIEQAARWQQQG
CCCCHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FDFRIAINVTPEDLTGPAFTDRMIRLLGMHKIDPTRFELEFTEGALMHNPAEVRHQLERM
CCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHHHHHHHHH
RQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLIRNLASDKTDQRLVKALIGLAKKL
HHCCCCEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
GYCVVAEGIETDEIRCLVKQWGCDEGQGYLIAKPMEAEALLNWIGPNQRLQSAAQAAEAA
CCEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHH
VVRDKRL
HHHCCCC
>Mature Secondary Structure
MNASAPIPLNETQRLLRIRELCVLEDTSDDVFDELVAMTAAFFEAPIALISIVDEHRQFF
CCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RARVGLKARETPRNVSFCAYTILSDTLFEIPDATLDARFVNNGLVTGHPDIRYYAGAPLI
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCCEECCCCEEEECCCCEE
TDDGIALGSLCVIDTKPREPMSEYQTQMLKRFASLVMKRIVGLRLSCFIDQPTGLYNRSR
ECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHH
LQEDIHQAVASSVDYQLVVVDMITSAFLNDIVKALGYSFSQDLVTAIKGRLECLLPPTCS
HHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCEEECCCCCC
LYKVSPTRFGFLLAGDRTPEHLFRTILKDFETPVECRGIPVQMQVGLGVVTLNQGAVEEQ
EEEECCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHCCCCEEEECCCEEEEECCCCCCHH
DWMRMVISAADDARDRDLGWAMYEPHFDAAQQRAFKLLSSLTRAVYAHDQLRLVYQPRID
HHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
LDSGLCTSVEALLRWNHPTLGAIGPAEFVPLAEKTALMRPLSLWVLTSAIEQAARWQQQG
CCCCHHHHHHHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FDFRIAINVTPEDLTGPAFTDRMIRLLGMHKIDPTRFELEFTEGALMHNPAEVRHQLERM
CCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCHHHHHHHHHHH
RQMGMDVAIDDFGTGYSNWNYLRQLPATTVKLDQSLIRNLASDKTDQRLVKALIGLAKKL
HHCCCCEEEECCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
GYCVVAEGIETDEIRCLVKQWGCDEGQGYLIAKPMEAEALLNWIGPNQRLQSAAQAAEAA
CCEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHCCCCHHHHHHHHHHHHH
VVRDKRL
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]