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The map label for this gene is dapB [H]

Identifier: 66047420

GI number: 66047420

Start: 4988407

End: 4989210

Strand: Reverse

Name: dapB [H]

Synonym: Psyr_4193

Alternate gene names: 66047420

Gene position: 4989210-4988407 (Counterclockwise)

Preceding gene: 66047421

Following gene: 66047419

Centisome position: 81.87

GC content: 61.07

Gene sequence:

>804_bases
ATGCGACGTATTGCTGTAGTAGGCGCCGCCGGGCGTATGGGCAAGACCTTGATCGAGGCGGTTCAGCAGGCGCCGGGCGC
CGGGTTGACCGCCGCTATCGATCGTCCTGACAGCACGCTGGTGGGCGCTGATGCGGGCGAACTGGCTGCGCTGGGTCGTA
TCGGTGTGCCGCTGTCAGGTGATCTGGCAAAGGTGGCGGACGAGTTCGACGTTCTGATCGACTTTACCCACCCTTCGGTG
ACGCTGAAAAATCTGGCGTTCTGTCGCAAGGCAGGCAAGGCGATGATTATCGGCACCACCGGTTTCAGCGCCGAAGAGAA
GCAGCGTCTGGAAGAGGCGGGCAAAGACATTCCCATCGTCTTTGCTGCCAATTTCAGTGTCGGCGTGAATCTGTGTCTGA
AGCTGCTCGACACCGCTGCGCGCGTTCTGGGTGATGAGGTCGATATCGAAATCACCGAAGCGCACCACCGGCACAAGGTT
GATGCGCCGTCCGGCACCGCCTTGCGCATGGGTGAAGTGGTTGCCAATGCGCTGGGTCGCGATCTGGAAAAAGTCGCGGT
CTACGGCCGTGAAGGCCAGACCGGTGCGCGTGATCGTCAGACCATCGGGTTTGCGACCCTTCGTGCCGGTGACATAGTGG
GTGATCACACCGTGCTGTTCGCTGCGGACGGTGAGCGGGTCGAGATCACGCACAAGGCGTCCAGTCGCATGACCTTCGCC
AAGGGTGCTGTGCGGGCTGCAATGTGGCTCGACGGCAAGGCACCAGGGCTTTACGACATGCAGGATGTGTTGGGTCTGCA
TTGA

Upstream 100 bases:

>100_bases
GCTTGAAAACGACGAGTCCCACTCTCCGAAAGCCAGTGGCTGGTTTGAGGGTGTGAAGCGTTTCTTCGGCGATCTGTAAG
GCTATCAACGGGAGCAGGGC

Downstream 100 bases:

>100_bases
TTTCATACAGGGCCATTCGTGGCCCTGTCGCATTTCCCCGCATTTCAGGCTCATTGGTGGTAGACCAAAATGGGCCTTTT
CTGTAAGCTACAGCTTTAGT

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MRRIAVVGAAGRMGKTLIEAVQQAPGAGLTAAIDRPDSTLVGADAGELAALGRIGVPLSGDLAKVADEFDVLIDFTHPSV
TLKNLAFCRKAGKAMIIGTTGFSAEEKQRLEEAGKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEITEAHHRHKV
DAPSGTALRMGEVVANALGRDLEKVAVYGREGQTGARDRQTIGFATLRAGDIVGDHTVLFAADGERVEITHKASSRMTFA
KGAVRAAMWLDGKAPGLYDMQDVLGLH

Sequences:

>Translated_267_residues
MRRIAVVGAAGRMGKTLIEAVQQAPGAGLTAAIDRPDSTLVGADAGELAALGRIGVPLSGDLAKVADEFDVLIDFTHPSV
TLKNLAFCRKAGKAMIIGTTGFSAEEKQRLEEAGKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEITEAHHRHKV
DAPSGTALRMGEVVANALGRDLEKVAVYGREGQTGARDRQTIGFATLRAGDIVGDHTVLFAADGERVEITHKASSRMTFA
KGAVRAAMWLDGKAPGLYDMQDVLGLH
>Mature_267_residues
MRRIAVVGAAGRMGKTLIEAVQQAPGAGLTAAIDRPDSTLVGADAGELAALGRIGVPLSGDLAKVADEFDVLIDFTHPSV
TLKNLAFCRKAGKAMIIGTTGFSAEEKQRLEEAGKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEITEAHHRHKV
DAPSGTALRMGEVVANALGRDLEKVAVYGREGQTGARDRQTIGFATLRAGDIVGDHTVLFAADGERVEITHKASSRMTFA
KGAVRAAMWLDGKAPGLYDMQDVLGLH

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=265, Percent_Identity=63.3962264150943, Blast_Score=322, Evalue=1e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 28124; Mature: 28124

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRIAVVGAAGRMGKTLIEAVQQAPGAGLTAAIDRPDSTLVGADAGELAALGRIGVPLSG
CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCHHHHHHCCCCCCCCC
DLAKVADEFDVLIDFTHPSVTLKNLAFCRKAGKAMIIGTTGFSAEEKQRLEEAGKDIPIV
CHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEE
FAANFSVGVNLCLKLLDTAARVLGDEVDIEITEAHHRHKVDAPSGTALRMGEVVANALGR
EEECCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCCCCCCCCHHHHHHHHHHHCC
DLEKVAVYGREGQTGARDRQTIGFATLRAGDIVGDHTVLFAADGERVEITHKASSRMTFA
CHHHHEEECCCCCCCCCCCCEEEEEEEECCCEECCCEEEEEECCCEEEEEECCCCCEEHH
KGAVRAAMWLDGKAPGLYDMQDVLGLH
HHHHEEEEEECCCCCCCCCHHHHHCCC
>Mature Secondary Structure
MRRIAVVGAAGRMGKTLIEAVQQAPGAGLTAAIDRPDSTLVGADAGELAALGRIGVPLSG
CCEEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCHHHHHHCCCCCCCCC
DLAKVADEFDVLIDFTHPSVTLKNLAFCRKAGKAMIIGTTGFSAEEKQRLEEAGKDIPIV
CHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEE
FAANFSVGVNLCLKLLDTAARVLGDEVDIEITEAHHRHKVDAPSGTALRMGEVVANALGR
EEECCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHCCCCCCCCCCCHHHHHHHHHHHCC
DLEKVAVYGREGQTGARDRQTIGFATLRAGDIVGDHTVLFAADGERVEITHKASSRMTFA
CHHHHEEECCCCCCCCCCCCEEEEEEEECCCEECCCEEEEEECCCEEEEEECCCCCEEHH
KGAVRAAMWLDGKAPGLYDMQDVLGLH
HHHHEEEEEECCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA