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The map label for this gene is ybjS [H]

Identifier: 66047283

GI number: 66047283

Start: 4838599

End: 4839591

Strand: Reverse

Name: ybjS [H]

Synonym: Psyr_4056

Alternate gene names: 66047283

Gene position: 4839591-4838599 (Counterclockwise)

Preceding gene: 66047284

Following gene: 66047282

Centisome position: 79.42

GC content: 60.02

Gene sequence:

>993_bases
ATGAAAATTCTGGTCACCGGCGCAAGTGGCTTCATCGGCGGACGCTTTGCGCGTTTTGCCCTTGAGCAGGGCATGAGCGT
GCGGATCAATGGCCGTCGTGCCGATGCGGTCGAGCATCTGGTCAGACGCGGCGCCGAGTTCATTCAGGGCGACCTCGCCG
ACCCGTATCTGGTGCGCGCGCTGTGCGATGACGTCGAGGCCGTGGTGCATTGCGCCGGCTCCGTCGGCATGTGGGGGCGT
CGTCAGGATTTTGTGCAGGGCAACGTGCAACTCACCGAGAACATTGTCGAGGGCTGCCTGAAACAAAGAGTGCGCAGGCT
GGTCCACCTGTCATCGCCGTCGATCTATTTCAATGGTCACTCGCGCCGCGATATCACCGAAGACCAGGTGCCCAGGCGCT
TCCACAACCACTATGCGGCCACCAAATACCTGGCCGAGCAAAAGGTCTTCGGCGCTGAAGAGTTCGGCCTGGAAGTGATT
GCCCTGCGGCCGCGTTTCGTCACCGGTGCTGGCGACAACAGTATCTTTCCGCGCCTGCTGCACATGCAGCGCAAGAAGCG
TCTGTCGATCGTAGGCAACGGCCTGAACATGGTCGATTTCACCAGCATGCAGAACCTCAATGAAGCGCTGTTGAGCAGCT
TGCTGGCAACCGGGTCTGCGCTGGGCAAGGCGTACAACATCAGTAACGGCACGCCGGTCCCGTTGTGGGATGCGATCAAT
TATGTGATGCGGCAGATGCAGTTGCCTCAGGTTACCCGCTATCGTTCTTACGGGCTGGCCTACAGTGCGGCGGCGATCAA
CGAAGCGGCCTGCATGCTGTGGCCGGGCCGACCTGAACCTACGCTGTCCAGACTGGGCATGCAGGTCATGAACAAGGACT
TCACGCTTGATATCGGCCGTGCAAGGCATTATCTGGATTATCAGCCGCAGGTCAGCCTGTGGACGGCGCTGGATGAATTC
TGTGGCTGGTGGCAGGCACAGCACCCGATCTGA

Upstream 100 bases:

>100_bases
GGCTGGTGCCGTTGAGCGATGAATGATCGTCATTACGATCATGTGTAATCAATGCGTGTCGGGTTACCCCTGTCACGCAG
ACGCGTTAATGGAGCGGTAA

Downstream 100 bases:

>100_bases
ATGCGGCAGTAGCACAGTGAGATTGATTCTGCGCTGTTGTTATACTGCCGAACTTTGATTTACGAACTTTGATTTAACAG
CTTCCTGAAGGGTTATTCAT

Product: dehydrogenase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKILVTGASGFIGGRFARFALEQGMSVRINGRRADAVEHLVRRGAEFIQGDLADPYLVRALCDDVEAVVHCAGSVGMWGR
RQDFVQGNVQLTENIVEGCLKQRVRRLVHLSSPSIYFNGHSRRDITEDQVPRRFHNHYAATKYLAEQKVFGAEEFGLEVI
ALRPRFVTGAGDNSIFPRLLHMQRKKRLSIVGNGLNMVDFTSMQNLNEALLSSLLATGSALGKAYNISNGTPVPLWDAIN
YVMRQMQLPQVTRYRSYGLAYSAAAINEAACMLWPGRPEPTLSRLGMQVMNKDFTLDIGRARHYLDYQPQVSLWTALDEF
CGWWQAQHPI

Sequences:

>Translated_330_residues
MKILVTGASGFIGGRFARFALEQGMSVRINGRRADAVEHLVRRGAEFIQGDLADPYLVRALCDDVEAVVHCAGSVGMWGR
RQDFVQGNVQLTENIVEGCLKQRVRRLVHLSSPSIYFNGHSRRDITEDQVPRRFHNHYAATKYLAEQKVFGAEEFGLEVI
ALRPRFVTGAGDNSIFPRLLHMQRKKRLSIVGNGLNMVDFTSMQNLNEALLSSLLATGSALGKAYNISNGTPVPLWDAIN
YVMRQMQLPQVTRYRSYGLAYSAAAINEAACMLWPGRPEPTLSRLGMQVMNKDFTLDIGRARHYLDYQPQVSLWTALDEF
CGWWQAQHPI
>Mature_330_residues
MKILVTGASGFIGGRFARFALEQGMSVRINGRRADAVEHLVRRGAEFIQGDLADPYLVRALCDDVEAVVHCAGSVGMWGR
RQDFVQGNVQLTENIVEGCLKQRVRRLVHLSSPSIYFNGHSRRDITEDQVPRRFHNHYAATKYLAEQKVFGAEEFGLEVI
ALRPRFVTGAGDNSIFPRLLHMQRKKRLSIVGNGLNMVDFTSMQNLNEALLSSLLATGSALGKAYNISNGTPVPLWDAIN
YVMRQMQLPQVTRYRSYGLAYSAAAINEAACMLWPGRPEPTLSRLGMQVMNKDFTLDIGRARHYLDYQPQVSLWTALDEF
CGWWQAQHPI

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=324, Percent_Identity=27.1604938271605, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI8393516, Length=324, Percent_Identity=27.1604938271605, Blast_Score=108, Evalue=8e-24,
Organism=Homo sapiens, GI116268111, Length=359, Percent_Identity=30.3621169916435, Blast_Score=101, Evalue=9e-22,
Organism=Homo sapiens, GI310132178, Length=335, Percent_Identity=26.2686567164179, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI310113012, Length=335, Percent_Identity=26.2686567164179, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI239745448, Length=335, Percent_Identity=26.2686567164179, Blast_Score=89, Evalue=7e-18,
Organism=Homo sapiens, GI260763931, Length=357, Percent_Identity=26.3305322128852, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI4504509, Length=357, Percent_Identity=26.3305322128852, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI4504507, Length=367, Percent_Identity=25.0681198910082, Blast_Score=78, Evalue=1e-14,
Organism=Escherichia coli, GI87081792, Length=333, Percent_Identity=31.5315315315315, Blast_Score=152, Evalue=4e-38,
Organism=Caenorhabditis elegans, GI17570557, Length=340, Percent_Identity=22.0588235294118, Blast_Score=71, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6321437, Length=344, Percent_Identity=25.5813953488372, Blast_Score=83, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37103; Mature: 37103

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILVTGASGFIGGRFARFALEQGMSVRINGRRADAVEHLVRRGAEFIQGDLADPYLVRA
CEEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCHHHHHCCCCCHHHHHH
LCDDVEAVVHCAGSVGMWGRRQDFVQGNVQLTENIVEGCLKQRVRRLVHLSSPSIYFNGH
HHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
SRRDITEDQVPRRFHNHYAATKYLAEQKVFGAEEFGLEVIALRPRFVTGAGDNSIFPRLL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEEECCEEEECCCCCCHHHHHH
HMQRKKRLSIVGNGLNMVDFTSMQNLNEALLSSLLATGSALGKAYNISNGTPVPLWDAIN
HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHH
YVMRQMQLPQVTRYRSYGLAYSAAAINEAACMLWPGRPEPTLSRLGMQVMNKDFTLDIGR
HHHHHHCCCHHHHHHHCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEHHH
ARHYLDYQPQVSLWTALDEFCGWWQAQHPI
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKILVTGASGFIGGRFARFALEQGMSVRINGRRADAVEHLVRRGAEFIQGDLADPYLVRA
CEEEEECCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCHHHHHCCCCCHHHHHH
LCDDVEAVVHCAGSVGMWGRRQDFVQGNVQLTENIVEGCLKQRVRRLVHLSSPSIYFNGH
HHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
SRRDITEDQVPRRFHNHYAATKYLAEQKVFGAEEFGLEVIALRPRFVTGAGDNSIFPRLL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEEECCEEEECCCCCCHHHHHH
HMQRKKRLSIVGNGLNMVDFTSMQNLNEALLSSLLATGSALGKAYNISNGTPVPLWDAIN
HHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHH
YVMRQMQLPQVTRYRSYGLAYSAAAINEAACMLWPGRPEPTLSRLGMQVMNKDFTLDIGR
HHHHHHCCCHHHHHHHCCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEHHH
ARHYLDYQPQVSLWTALDEFCGWWQAQHPI
HHHHCCCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]