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The map label for this gene is arpC [H]

Identifier: 66047236

GI number: 66047236

Start: 4775378

End: 4776838

Strand: Direct

Name: arpC [H]

Synonym: Psyr_4009

Alternate gene names: 66047236

Gene position: 4775378-4776838 (Clockwise)

Preceding gene: 66047235

Following gene: 66047242

Centisome position: 78.37

GC content: 63.04

Gene sequence:

>1461_bases
ATGAGCAAGTCATTGATCTCACTTGCAGTTACCGCGTTCATTCTCGGCGGCTGCTCTTTGATCCCCGATTACAAGCAGCC
GCAAGCACCGGTCGCGGCACAATATCCGCAAGGGCCGGCGTACTCGCCGGTCGAAGGCGCCAAAATGGCCGCCGCGGAGC
AAGGCTGGCGGCACTTCTTCAATGACCCGGCGCTGCAACAGCTGATTCAGACTGCACTGCTCAACAACCGTGACCTGCGG
GTTGCGGCGCTGAACATCGACGCCTACCGCGCCCAGTACCGTATCCAGCGCTCGGACCTGTTCCCTGCTGTTTCGGCCAC
CGGTAGCGGCTCACGTCAGCGCGTGCCGGGTGATCAGTCGCAGACCGGTCAGCCAGGCATCACCAGCAGCTACTCGGCCA
CCCTGGGTGTCAGCTCGTACGAGCTGGACCTCTTCGGCCGGGTCCGCAGCCTCAGCGAGCAGGCGCTGGAGACCTACTTC
GCCAGCGAGGAAGCGCGTCGCAGCACCCAGATCAGTCTGGTGGCCAGCGTCGCCAATGCCTACATGACCTGGCAGGCCGA
CAAGGAACTGCTCAAGCTGACGCAGGACACCCTGAAGACCTACGAAGAAAGCTTCCGTCTGACCTCGCGCGCCAGCGAAG
TCGGCGTTTCTTCGGCACTGGACCTGAGCCAGTCGCGCACCGCCGTCGAAAGCGCGCGCGCCAAACTGGCCCAGTACCAG
CGCCTGGTTGCCCAGGATCAGAACAGCCTGGTGCTGCTGCTTGGCACCAGCCTGCCCGACAACCTGCCGGCCAGCCACTT
GCTCGATTCCGACATGCTGACCGAAATGCCGGCAGGCCTGCCGTCCGACCTGCTGCAGCGTCGTCCGGACATTCTCGAGG
CCGAGCACTCGCTCAAGGCGGCCAACGCCAACATCGGCGCGGCACGTGCAGCGTTCTTCCCGAGCATCAGCCTGACGGCC
AGTGCCGGGACCAGCAGCAGCGAGCTGTCCGGCCTGTTCAAGGGCGGATCGGGCGCCTGGCTGTTCCAGCCAAGCATCAA
CATCCCGATCTTCAACGCCGGCAACCTGCGCGCCAGCCTGGACTACTCGAAAATCCAGAAGGAAATCAGCGTCGCCAACT
ACGAGAAGGCGATTCAGACCGCCTTCCAGGAAGTGTCCGACGGCCTGGCTTCACGCAAGACCTATGACGAGCAGCTCCAG
GCGCAACGTGACTTCGTTGCGGCCAACCAGGATTACTACCGTCTGGCCGAACGTCGCTACCGGATCGGCATCGACAGCAA
CCTGACCTTCCTCGACGCCCAGCGCTCGCTGTTCAGTGCGCAACAAACGCTGATCACCGATCGCCTGTCGCAGCTGACCA
GCGAGGTCAACCTGTACAAGGCCCTCGGCGGCGGCTGGTATGAAAGAACCGGGCAGACCGAAACCATCTCCAAGGAGAAG
CCTTCGGTTCAGTTGTTCTGA

Upstream 100 bases:

>100_bases
CAGTTATTCTGGCGATCTTCTGGGTGCCCCTGTTCTTCGTAACGGTTTCAGGGCTCTTCAAGAGCAAGCAGAAACATATT
TCACACGATGAGGCTGGCCA

Downstream 100 bases:

>100_bases
TTGCAGTGCATAAAAAACCCACCTGATCAGGTGGGTTTTTTTATGGCCGAAACACACCTGCGATCAGTGATCCTGATGCA
GGTACTTGGGCTCTTTGGGC

Product: RND efflux system, outer membrane lipoprotein, NodT

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 486; Mature: 485

Protein sequence:

>486_residues
MSKSLISLAVTAFILGGCSLIPDYKQPQAPVAAQYPQGPAYSPVEGAKMAAAEQGWRHFFNDPALQQLIQTALLNNRDLR
VAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRVPGDQSQTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYF
ASEEARRSTQISLVASVANAYMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQYQ
RLVAQDQNSLVLLLGTSLPDNLPASHLLDSDMLTEMPAGLPSDLLQRRPDILEAEHSLKAANANIGAARAAFFPSISLTA
SAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNLRASLDYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQ
AQRDFVAANQDYYRLAERRYRIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERTGQTETISKEK
PSVQLF

Sequences:

>Translated_486_residues
MSKSLISLAVTAFILGGCSLIPDYKQPQAPVAAQYPQGPAYSPVEGAKMAAAEQGWRHFFNDPALQQLIQTALLNNRDLR
VAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRVPGDQSQTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYF
ASEEARRSTQISLVASVANAYMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQYQ
RLVAQDQNSLVLLLGTSLPDNLPASHLLDSDMLTEMPAGLPSDLLQRRPDILEAEHSLKAANANIGAARAAFFPSISLTA
SAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNLRASLDYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQ
AQRDFVAANQDYYRLAERRYRIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERTGQTETISKEK
PSVQLF
>Mature_485_residues
SKSLISLAVTAFILGGCSLIPDYKQPQAPVAAQYPQGPAYSPVEGAKMAAAEQGWRHFFNDPALQQLIQTALLNNRDLRV
AALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRVPGDQSQTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFA
SEEARRSTQISLVASVANAYMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQYQR
LVAQDQNSLVLLLGTSLPDNLPASHLLDSDMLTEMPAGLPSDLLQRRPDILEAEHSLKAANANIGAARAAFFPSISLTAS
AGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNLRASLDYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQA
QRDFVAANQDYYRLAERRYRIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERTGQTETISKEKP
SVQLF

Specific function: The outer membrane component of an antibiotic efflux pump. Confers resistance to numerous structurally unrelated antibiotics such as carbenicillin, chloramphenicol, erythromycin, novobiocin, streptomycin and tetracycline. Is not involved in organic solven

COG id: COG1538

COG function: function code MU; Outer membrane protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the outer membrane factor (OMF) (TC 1.B.17) family [H]

Homologues:

Organism=Escherichia coli, GI1786785, Length=462, Percent_Identity=43.5064935064935, Blast_Score=354, Evalue=7e-99,
Organism=Escherichia coli, GI2367348, Length=484, Percent_Identity=24.7933884297521, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003423
- InterPro:   IPR010131 [H]

Pfam domain/function: PF02321 OEP [H]

EC number: NA

Molecular weight: Translated: 53122; Mature: 52991

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSLISLAVTAFILGGCSLIPDYKQPQAPVAAQYPQGPAYSPVEGAKMAAAEQGWRHFF
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
NDPALQQLIQTALLNNRDLRVAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRVPGDQS
CCHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
QTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFASEEARRSTQISLVASVANA
CCCCCCCCCCCCCEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQYQ
HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RLVAQDQNSLVLLLGTSLPDNLPASHLLDSDMLTEMPAGLPSDLLQRRPDILEAEHSLKA
HHHHCCCCCEEEEEECCCCCCCCHHHHHCHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHH
ANANIGAARAAFFPSISLTASAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNLRASL
CCCCCCHHHHHHCCCCEEEECCCCCHHHHHHHEECCCCCEEECCCCCCEEECCCCCEECC
DYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQAQRDFVAANQDYYRLAERRY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHE
RIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERTGQTETISKEK
EECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCC
PSVQLF
CCEECC
>Mature Secondary Structure 
SKSLISLAVTAFILGGCSLIPDYKQPQAPVAAQYPQGPAYSPVEGAKMAAAEQGWRHFF
CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
NDPALQQLIQTALLNNRDLRVAALNIDAYRAQYRIQRSDLFPAVSATGSGSRQRVPGDQS
CCHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
QTGQPGITSSYSATLGVSSYELDLFGRVRSLSEQALETYFASEEARRSTQISLVASVANA
CCCCCCCCCCCCCEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YMTWQADKELLKLTQDTLKTYEESFRLTSRASEVGVSSALDLSQSRTAVESARAKLAQYQ
HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RLVAQDQNSLVLLLGTSLPDNLPASHLLDSDMLTEMPAGLPSDLLQRRPDILEAEHSLKA
HHHHCCCCCEEEEEECCCCCCCCHHHHHCHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHH
ANANIGAARAAFFPSISLTASAGTSSSELSGLFKGGSGAWLFQPSINIPIFNAGNLRASL
CCCCCCHHHHHHCCCCEEEECCCCCHHHHHHHEECCCCCEEECCCCCCEEECCCCCEECC
DYSKIQKEISVANYEKAIQTAFQEVSDGLASRKTYDEQLQAQRDFVAANQDYYRLAERRY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHE
RIGIDSNLTFLDAQRSLFSAQQTLITDRLSQLTSEVNLYKALGGGWYERTGQTETISKEK
EECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCC
PSVQLF
CCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11160799 [H]