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The map label for this gene is yciR [C]

Identifier: 66047169

GI number: 66047169

Start: 4688223

End: 4690577

Strand: Reverse

Name: yciR [C]

Synonym: Psyr_3942

Alternate gene names: 66047169

Gene position: 4690577-4688223 (Counterclockwise)

Preceding gene: 66047170

Following gene: 66047168

Centisome position: 76.97

GC content: 59.79

Gene sequence:

>2355_bases
ATGAAATTTAAAGCCAGCTTTCAGGCGCGCATCGCCGGGGTTCTGATTGTCCTGTTGCTGATTGTCGTGAGTGCAGTTTA
TCTCGCCGTCAAGGTTGCAACGGGCGATGCGGTGCGTACTCAGGCCCAGGCACAACTGGAAGTGGGTAGCCGCGTGTTCG
AACGGCTGATCGATCTGCGCGGCAAACGTCTGCGTGACACGGTGCAGTTGGTGGCCGCCGATTTTGGCTTTCGCGACGCC
GTGGCCAGTGCCGATTCCTCGACCATTCGCTCGGTGTTGCTCAACCATGGCAAACGCATCAACGCCAGCGACATGTTCCT
GCTGGGCATGGATGGCGTGGTGATTGCCAGCACCGTGCCGAAAGTCCCCGAGGGTTCCAGATTTGTCTATGACCAGGCCC
TGCGCAACGCCAAACGTGCCGGTCAGTCAGTGCTCATTGTGCCCGGCGGCGGAGACCCTCATTTGCTGGTGGAGGCCACC
GTTCTCGCGCCATTGCCGATCGGCCGCGTGGTCATGGGCTTTACCATCGACAGCGATATTGCCGAAGAACTGCGTTCGCT
CAGCGGTCTGGAAGTGTCTTTTCTCACCGTAGAAGACGGTAAGACCGGTGATCTGATCAGTACCCAGCCAGCGGCCCTGC
ACGCGGGTTTGATCGAGCTGATGCGCAGCTCCTCGGAAGGCCAGATGTTGCTGACCGAGCAATCGAACCTTAACTTTCTC
AGTCAGACCCTGATGCTCGCCAACACCAGCAATGGCGGCGACGGTCAGGTCATCGCGCTGTTGCAGAGCCCTCTGGACAA
GGCCTATCAGGCATTCGCGCCACTGAATCAAAAGATTTTCTGGATTTCCATGGCCGCCCTGGTGGCCTCGCTGATCGGCA
CACTGGCGCTGGCGCGAAGCGTCTCGCTGCCGGTACGGGCCCTGGCCACGGCGGCCAAACGTATTGGTGATGGCGACTAT
AAAACGCCGGTCGCGCTGGTGCGTAGCGATGAACTCGGCATGCTCGCCGACGCGATCAACACCATGCAGCAGGGCATTGC
CGTGCGCGAGGGGCAATTGGCCCACAACGCCCTGCACGACAATCTGACCGGGCTGCCCAACCGGGCGCTGGTGATGGAGC
GTCTGGGCAGTTCGATTGCGGCACATCGCGGGGTTGCCCTGTTGTCTCTGAGCATCGAGAACCTCGCCACGATCAGCGAA
AGCGTGAGCGCCGAAGGTGTTGACCAGTTGTTACGGCAGGCGGGTCAGCGCCTGCAAGGTAATCTGCGCGCCGGCGATAC
CGTGGCCCGTCTGGGGGCCAACGAGTTTCTGCTGTTGCTGGACAACATTGCCAGCGATGGTGCGGTGGGCATGGCAGACG
CTGTGCAGCGTCTGCTCAGTGAGCCGCAGCGTATCGACAATCATGAGCTGGAGCTTGAGTGCTGCATTGGTATCACGGTG
TACCCGGAACACGGTGATTCCGCCCAGGAATTGCTCAGCCGTGCGGCAATTGCCCGCAAGGATGCCACGTTCCTTCCCGG
TCGCCTGCAGATCTATCAGGATGGACGTGACCTGGCCCACCAGCGGCAGATCACGCTCATTCGTGACCTGCGCAAGGCCG
CGCAGAATGGCGAACTATCGCTGCATTACCAGCCCAAGCTGGATATTCGTCAGGGCTATGTGCGTCAGGCCGAAGCGTTG
TTGCGCTGGGCTCATCCGCAGTTCGGCAGTGTCTCGCCCGCCGAATTCATCGTCCTCGCCGAGCGCACCGGAAGCATTTA
CCTGCTGACCAACTGGGTGATCGAAGAGGCAATGCGCCAGTTGGCCGTATGGCGCCAGCGCGGTCTGGTCCTGCAGGTAT
CGGTGAACATTTCCGCTGATGACCTGCTGGGTGATGACCTGGTCGGCTATGTCGTGAAACTGCTCAAGCAATACGCCGTG
CCTGCCGAACAACTGTTATTCGAGATCACCGAAAGTGCAGTCATGAGCGAACCGGAAAAGGCACTGATCGTCCTGCATCG
CCTGCGCGATTGCGGCATCAGCCTGTCGATCGACGATTTCGGTACCGGTTACTCGTCATTGGCGCACTTGAAGCGTCTGC
CCGTGCAGGAGCTGAAAATCGATCAGTCTTTCGTGCGCAACCTGGATGAAACCAGTGAAGACGCAGTGATCGTGCGGTCG
ACCATTGAAATGAGCCACAACCTCGGACTGAAGGTGGTGGCAGAGGGTGTCGAGTACCAACACAGCCTGGACCTGCTCCG
GCGTTGGCACTGCGATACGGCCCAGGGTTACCTGATCAGTCGACCGCTGACCGCGTCGGCATTCGAGGCATGGATTGCCA
CGTACCAGGCGTCACCCGGTCTTATGGTGAATTAA

Upstream 100 bases:

>100_bases
CCCAGCGTTTCAACCTGGCGGTCGAAGTGGAGGCCGAGGACAAACCCGGCAAGCCCGCACCGGGCCGCTTCGGTGACGCC
TTCCACGAGGCCACGCATGA

Downstream 100 bases:

>100_bases
TTCATGTTGCACAAAACATCGCTGCTGTTAGGGTCTTTGCTGGTGGGTATGGCGGGCGTTGCTCCGACGCCCGCTTTGGG
CGACAACGGCCGGTTGATCG

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 784; Mature: 784

Protein sequence:

>784_residues
MKFKASFQARIAGVLIVLLLIVVSAVYLAVKVATGDAVRTQAQAQLEVGSRVFERLIDLRGKRLRDTVQLVAADFGFRDA
VASADSSTIRSVLLNHGKRINASDMFLLGMDGVVIASTVPKVPEGSRFVYDQALRNAKRAGQSVLIVPGGGDPHLLVEAT
VLAPLPIGRVVMGFTIDSDIAEELRSLSGLEVSFLTVEDGKTGDLISTQPAALHAGLIELMRSSSEGQMLLTEQSNLNFL
SQTLMLANTSNGGDGQVIALLQSPLDKAYQAFAPLNQKIFWISMAALVASLIGTLALARSVSLPVRALATAAKRIGDGDY
KTPVALVRSDELGMLADAINTMQQGIAVREGQLAHNALHDNLTGLPNRALVMERLGSSIAAHRGVALLSLSIENLATISE
SVSAEGVDQLLRQAGQRLQGNLRAGDTVARLGANEFLLLLDNIASDGAVGMADAVQRLLSEPQRIDNHELELECCIGITV
YPEHGDSAQELLSRAAIARKDATFLPGRLQIYQDGRDLAHQRQITLIRDLRKAAQNGELSLHYQPKLDIRQGYVRQAEAL
LRWAHPQFGSVSPAEFIVLAERTGSIYLLTNWVIEEAMRQLAVWRQRGLVLQVSVNISADDLLGDDLVGYVVKLLKQYAV
PAEQLLFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQSFVRNLDETSEDAVIVRS
TIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPLTASAFEAWIATYQASPGLMVN

Sequences:

>Translated_784_residues
MKFKASFQARIAGVLIVLLLIVVSAVYLAVKVATGDAVRTQAQAQLEVGSRVFERLIDLRGKRLRDTVQLVAADFGFRDA
VASADSSTIRSVLLNHGKRINASDMFLLGMDGVVIASTVPKVPEGSRFVYDQALRNAKRAGQSVLIVPGGGDPHLLVEAT
VLAPLPIGRVVMGFTIDSDIAEELRSLSGLEVSFLTVEDGKTGDLISTQPAALHAGLIELMRSSSEGQMLLTEQSNLNFL
SQTLMLANTSNGGDGQVIALLQSPLDKAYQAFAPLNQKIFWISMAALVASLIGTLALARSVSLPVRALATAAKRIGDGDY
KTPVALVRSDELGMLADAINTMQQGIAVREGQLAHNALHDNLTGLPNRALVMERLGSSIAAHRGVALLSLSIENLATISE
SVSAEGVDQLLRQAGQRLQGNLRAGDTVARLGANEFLLLLDNIASDGAVGMADAVQRLLSEPQRIDNHELELECCIGITV
YPEHGDSAQELLSRAAIARKDATFLPGRLQIYQDGRDLAHQRQITLIRDLRKAAQNGELSLHYQPKLDIRQGYVRQAEAL
LRWAHPQFGSVSPAEFIVLAERTGSIYLLTNWVIEEAMRQLAVWRQRGLVLQVSVNISADDLLGDDLVGYVVKLLKQYAV
PAEQLLFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQSFVRNLDETSEDAVIVRS
TIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPLTASAFEAWIATYQASPGLMVN
>Mature_784_residues
MKFKASFQARIAGVLIVLLLIVVSAVYLAVKVATGDAVRTQAQAQLEVGSRVFERLIDLRGKRLRDTVQLVAADFGFRDA
VASADSSTIRSVLLNHGKRINASDMFLLGMDGVVIASTVPKVPEGSRFVYDQALRNAKRAGQSVLIVPGGGDPHLLVEAT
VLAPLPIGRVVMGFTIDSDIAEELRSLSGLEVSFLTVEDGKTGDLISTQPAALHAGLIELMRSSSEGQMLLTEQSNLNFL
SQTLMLANTSNGGDGQVIALLQSPLDKAYQAFAPLNQKIFWISMAALVASLIGTLALARSVSLPVRALATAAKRIGDGDY
KTPVALVRSDELGMLADAINTMQQGIAVREGQLAHNALHDNLTGLPNRALVMERLGSSIAAHRGVALLSLSIENLATISE
SVSAEGVDQLLRQAGQRLQGNLRAGDTVARLGANEFLLLLDNIASDGAVGMADAVQRLLSEPQRIDNHELELECCIGITV
YPEHGDSAQELLSRAAIARKDATFLPGRLQIYQDGRDLAHQRQITLIRDLRKAAQNGELSLHYQPKLDIRQGYVRQAEAL
LRWAHPQFGSVSPAEFIVLAERTGSIYLLTNWVIEEAMRQLAVWRQRGLVLQVSVNISADDLLGDDLVGYVVKLLKQYAV
PAEQLLFEITESAVMSEPEKALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQSFVRNLDETSEDAVIVRS
TIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPLTASAFEAWIATYQASPGLMVN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=420, Percent_Identity=34.2857142857143, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI87081921, Length=421, Percent_Identity=32.7790973871734, Blast_Score=212, Evalue=8e-56,
Organism=Escherichia coli, GI226510982, Length=498, Percent_Identity=30.3212851405622, Blast_Score=207, Evalue=2e-54,
Organism=Escherichia coli, GI1790496, Length=252, Percent_Identity=37.6984126984127, Blast_Score=167, Evalue=2e-42,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=33.4745762711864, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI87081743, Length=242, Percent_Identity=33.0578512396694, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI87081980, Length=267, Percent_Identity=33.3333333333333, Blast_Score=124, Evalue=3e-29,
Organism=Escherichia coli, GI1787055, Length=252, Percent_Identity=32.1428571428571, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1786507, Length=261, Percent_Identity=31.4176245210728, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1788502, Length=246, Percent_Identity=31.3008130081301, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87082096, Length=414, Percent_Identity=28.0193236714976, Blast_Score=116, Evalue=7e-27,
Organism=Escherichia coli, GI1788849, Length=240, Percent_Identity=33.3333333333333, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787410, Length=150, Percent_Identity=28, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 85135; Mature: 85135

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKASFQARIAGVLIVLLLIVVSAVYLAVKVATGDAVRTQAQAQLEVGSRVFERLIDLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
GKRLRDTVQLVAADFGFRDAVASADSSTIRSVLLNHGKRINASDMFLLGMDGVVIASTVP
CHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCC
KVPEGSRFVYDQALRNAKRAGQSVLIVPGGGDPHLLVEATVLAPLPIGRVVMGFTIDSDI
CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEECHHH
AEELRSLSGLEVSFLTVEDGKTGDLISTQPAALHAGLIELMRSSSEGQMLLTEQSNLNFL
HHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHH
SQTLMLANTSNGGDGQVIALLQSPLDKAYQAFAPLNQKIFWISMAALVASLIGTLALARS
HHHHHEEECCCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VSLPVRALATAAKRIGDGDYKTPVALVRSDELGMLADAINTMQQGIAVREGQLAHNALHD
CCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
NLTGLPNRALVMERLGSSIAAHRGVALLSLSIENLATISESVSAEGVDQLLRQAGQRLQG
CCCCCCCHHHHHHHHCCHHHHHCCEEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
NLRAGDTVARLGANEFLLLLDNIASDGAVGMADAVQRLLSEPQRIDNHELELECCIGITV
CCCCCCHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHCCCCCEEEEEEEEEEE
YPEHGDSAQELLSRAAIARKDATFLPGRLQIYQDGRDLAHQRQITLIRDLRKAAQNGELS
ECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEE
LHYQPKLDIRQGYVRQAEALLRWAHPQFGSVSPAEFIVLAERTGSIYLLTNWVIEEAMRQ
EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHH
LAVWRQRGLVLQVSVNISADDLLGDDLVGYVVKLLKQYAVPAEQLLFEITESAVMSEPEK
HHHHHHCCEEEEEEECCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
ALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQSFVRNLDETSEDAVIVRS
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCCEEEEEE
TIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPLTASAFEAWIATYQASPG
HHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCC
LMVN
CCCC
>Mature Secondary Structure
MKFKASFQARIAGVLIVLLLIVVSAVYLAVKVATGDAVRTQAQAQLEVGSRVFERLIDLR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHC
GKRLRDTVQLVAADFGFRDAVASADSSTIRSVLLNHGKRINASDMFLLGMDGVVIASTVP
CHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEECCCEEEECCCC
KVPEGSRFVYDQALRNAKRAGQSVLIVPGGGDPHLLVEATVLAPLPIGRVVMGFTIDSDI
CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEECHHH
AEELRSLSGLEVSFLTVEDGKTGDLISTQPAALHAGLIELMRSSSEGQMLLTEQSNLNFL
HHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHH
SQTLMLANTSNGGDGQVIALLQSPLDKAYQAFAPLNQKIFWISMAALVASLIGTLALARS
HHHHHEEECCCCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
VSLPVRALATAAKRIGDGDYKTPVALVRSDELGMLADAINTMQQGIAVREGQLAHNALHD
CCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
NLTGLPNRALVMERLGSSIAAHRGVALLSLSIENLATISESVSAEGVDQLLRQAGQRLQG
CCCCCCCHHHHHHHHCCHHHHHCCEEEEEEEHHHHHHHHHHHCHHHHHHHHHHHHHHHCC
NLRAGDTVARLGANEFLLLLDNIASDGAVGMADAVQRLLSEPQRIDNHELELECCIGITV
CCCCCCHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCHHCCCCCEEEEEEEEEEE
YPEHGDSAQELLSRAAIARKDATFLPGRLQIYQDGRDLAHQRQITLIRDLRKAAQNGELS
ECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCEE
LHYQPKLDIRQGYVRQAEALLRWAHPQFGSVSPAEFIVLAERTGSIYLLTNWVIEEAMRQ
EEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEHHHHHHHHHHH
LAVWRQRGLVLQVSVNISADDLLGDDLVGYVVKLLKQYAVPAEQLLFEITESAVMSEPEK
HHHHHHCCEEEEEEECCCHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH
ALIVLHRLRDCGISLSIDDFGTGYSSLAHLKRLPVQELKIDQSFVRNLDETSEDAVIVRS
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCCEEEEEE
TIEMSHNLGLKVVAEGVEYQHSLDLLRRWHCDTAQGYLISRPLTASAFEAWIATYQASPG
HHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCC
LMVN
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]