| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is fabG [H]
Identifier: 66047162
GI number: 66047162
Start: 4680215
End: 4680976
Strand: Reverse
Name: fabG [H]
Synonym: Psyr_3935
Alternate gene names: 66047162
Gene position: 4680976-4680215 (Counterclockwise)
Preceding gene: 66047163
Following gene: 66047161
Centisome position: 76.82
GC content: 65.49
Gene sequence:
>762_bases ATGACGCGTAAAGTTGCAGTGATAACCGGTGCCGCCAGTGGCATTGGTCAGGCCCTGGTAGTGGCTTTTGCCCGCCAGGG GGTGGCGGTGGCAGGCGGGTTCTATCCGGCTGATCCGCATGATCCGGACGAAACCCGCAGGCTGGTGGCGGAGGCGGGCG GCGAATGCCTGATGCTGCCACTGGACGTGACCTTCACCGAGTCGGTCGATGACCTGGCCGCGCAGGCGGTCAAGGCATTC GGCCGCATCGACTACGCGGTTGCCAATGCCGGATTGTTGCGCCGCGCGCCGTTGCTGGAAATGACCGACGAGCGCTGGAA CGAGATGCTCGACGTCGACCTGACAGGCGTGATGCGCACCTTCCGCGCCGCCGTCCGGCACATGGGTGAGGGCGGGGCGC TGGTGGCGATTTCCTCGATTGCCGGTGGTGTGTATGGCTGGCAGGACCATTCCCATTACGCAGCGGCCAAGGCTGGCGTA CCAGGGCTGTGTCGGTCACTGGCGGTGGAGCTCGCAGCGAAGGGCATCCGTTGCAACGCGGTGATTCCCGGTTTGATCGA GACGCCGCAATCGCTGGACAGCACGAACTCGCTGGGGCCTGAAGGTCTGGCGCAGGCGGCCAAAGCCATCCCGCTGGGCC GTGTCGGCCGGGCGGATGAAGTCGCTGCGCTGGTGCGTTTTCTGTGCAGCGATGAAGCCAGTTACCTGACCGGGCAAAGC ATCGTGATCGACGGTGGCCTGACCGTGCGCTGGCCCGAGTAG
Upstream 100 bases:
>100_bases TCGGCGTTGTACTTCGGCGCAGTGCCTTGCTTCCTGTCGGGTGCGCTGATGTTCGCGGCTAAACACGTGCGACCTGAAAC GGTGAAATGAGGAGCAGCAC
Downstream 100 bases:
>100_bases ATCGATTCGGATCGGGAGCGTGCTCGCGAAGCGTTCAGTACAGACGCCGGGAATGGCGTGCCAGTGACTGAGCGTTCGCG AGCCATACGCCGTGATCCCC
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 253; Mature: 252
Protein sequence:
>253_residues MTRKVAVITGAASGIGQALVVAFARQGVAVAGGFYPADPHDPDETRRLVAEAGGECLMLPLDVTFTESVDDLAAQAVKAF GRIDYAVANAGLLRRAPLLEMTDERWNEMLDVDLTGVMRTFRAAVRHMGEGGALVAISSIAGGVYGWQDHSHYAAAKAGV PGLCRSLAVELAAKGIRCNAVIPGLIETPQSLDSTNSLGPEGLAQAAKAIPLGRVGRADEVAALVRFLCSDEASYLTGQS IVIDGGLTVRWPE
Sequences:
>Translated_253_residues MTRKVAVITGAASGIGQALVVAFARQGVAVAGGFYPADPHDPDETRRLVAEAGGECLMLPLDVTFTESVDDLAAQAVKAF GRIDYAVANAGLLRRAPLLEMTDERWNEMLDVDLTGVMRTFRAAVRHMGEGGALVAISSIAGGVYGWQDHSHYAAAKAGV PGLCRSLAVELAAKGIRCNAVIPGLIETPQSLDSTNSLGPEGLAQAAKAIPLGRVGRADEVAALVRFLCSDEASYLTGQS IVIDGGLTVRWPE >Mature_252_residues TRKVAVITGAASGIGQALVVAFARQGVAVAGGFYPADPHDPDETRRLVAEAGGECLMLPLDVTFTESVDDLAAQAVKAFG RIDYAVANAGLLRRAPLLEMTDERWNEMLDVDLTGVMRTFRAAVRHMGEGGALVAISSIAGGVYGWQDHSHYAAAKAGVP GLCRSLAVELAAKGIRCNAVIPGLIETPQSLDSTNSLGPEGLAQAAKAIPLGRVGRADEVAALVRFLCSDEASYLTGQSI VIDGGLTVRWPE
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=254, Percent_Identity=35.0393700787402, Blast_Score=120, Evalue=1e-27, Organism=Homo sapiens, GI40254992, Length=248, Percent_Identity=35.4838709677419, Blast_Score=119, Evalue=2e-27, Organism=Homo sapiens, GI19923817, Length=248, Percent_Identity=32.6612903225806, Blast_Score=116, Evalue=1e-26, Organism=Homo sapiens, GI32483357, Length=256, Percent_Identity=31.640625, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=30.8, Blast_Score=105, Evalue=5e-23, Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=32.8063241106719, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI5031737, Length=262, Percent_Identity=31.6793893129771, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI4504505, Length=236, Percent_Identity=31.7796610169492, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=29.3436293436293, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=30.9160305343511, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI59889578, Length=213, Percent_Identity=31.924882629108, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI4503301, Length=207, Percent_Identity=29.4685990338164, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI31542939, Length=221, Percent_Identity=30.316742081448, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI7705925, Length=244, Percent_Identity=27.8688524590164, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI7706318, Length=214, Percent_Identity=27.1028037383178, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI40807363, Length=193, Percent_Identity=31.6062176165803, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI33667109, Length=203, Percent_Identity=31.0344827586207, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI83715985, Length=261, Percent_Identity=28.735632183908, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI223718074, Length=193, Percent_Identity=32.6424870466321, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1787335, Length=246, Percent_Identity=37.3983739837398, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=37.4045801526718, Blast_Score=137, Evalue=9e-34, Organism=Escherichia coli, GI1788459, Length=253, Percent_Identity=34.3873517786561, Blast_Score=133, Evalue=9e-33, Organism=Escherichia coli, GI2367175, Length=256, Percent_Identity=35.9375, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1789208, Length=252, Percent_Identity=32.9365079365079, Blast_Score=119, Evalue=1e-28, Organism=Escherichia coli, GI1789378, Length=250, Percent_Identity=29.2, Blast_Score=110, Evalue=7e-26, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=28.5140562248996, Blast_Score=107, Evalue=6e-25, Organism=Escherichia coli, GI1790717, Length=250, Percent_Identity=29.6, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=30.859375, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI2367365, Length=249, Percent_Identity=30.5220883534137, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787905, Length=246, Percent_Identity=31.7073170731707, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1789057, Length=257, Percent_Identity=32.295719844358, Blast_Score=79, Evalue=3e-16, Organism=Caenorhabditis elegans, GI25147288, Length=250, Percent_Identity=34.8, Blast_Score=137, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=30.0751879699248, Blast_Score=125, Evalue=3e-29, Organism=Caenorhabditis elegans, GI17555706, Length=263, Percent_Identity=32.6996197718631, Blast_Score=121, Evalue=3e-28, Organism=Caenorhabditis elegans, GI17562910, Length=272, Percent_Identity=33.0882352941176, Blast_Score=120, Evalue=8e-28, Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=30.9803921568627, Blast_Score=113, Evalue=9e-26, Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=30.859375, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=31.0861423220974, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17559104, Length=270, Percent_Identity=31.1111111111111, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=33.4600760456274, Blast_Score=110, Evalue=9e-25, Organism=Caenorhabditis elegans, GI17563726, Length=283, Percent_Identity=29.3286219081272, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI72000259, Length=264, Percent_Identity=28.4090909090909, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI193204405, Length=259, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17560150, Length=265, Percent_Identity=29.0566037735849, Blast_Score=100, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17560676, Length=260, Percent_Identity=31.1538461538462, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=30.3030303030303, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=29.8850574712644, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17562906, Length=267, Percent_Identity=29.2134831460674, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=30.188679245283, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17565030, Length=265, Percent_Identity=28.3018867924528, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=28.5171102661597, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=28.030303030303, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=28.9473684210526, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17568967, Length=213, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17561402, Length=257, Percent_Identity=27.6264591439689, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17560220, Length=261, Percent_Identity=28.3524904214559, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17536651, Length=251, Percent_Identity=30.6772908366534, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=30.0380228136882, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115534694, Length=254, Percent_Identity=29.1338582677165, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17508651, Length=259, Percent_Identity=28.1853281853282, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17536025, Length=247, Percent_Identity=29.5546558704453, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=30.2083333333333, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17567345, Length=205, Percent_Identity=27.3170731707317, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193207185, Length=148, Percent_Identity=29.7297297297297, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=187, Percent_Identity=31.0160427807487, Blast_Score=99, Evalue=7e-22, Organism=Saccharomyces cerevisiae, GI6322861, Length=220, Percent_Identity=32.2727272727273, Blast_Score=90, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6322226, Length=204, Percent_Identity=26.4705882352941, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=32.5301204819277, Blast_Score=115, Evalue=2e-26, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=33.6, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI24644339, Length=258, Percent_Identity=29.8449612403101, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=30.8943089430894, Blast_Score=103, Evalue=9e-23, Organism=Drosophila melanogaster, GI21357041, Length=257, Percent_Identity=31.9066147859922, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI21355319, Length=257, Percent_Identity=31.1284046692607, Blast_Score=101, Evalue=4e-22, Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=31.25, Blast_Score=98, Evalue=5e-21, Organism=Drosophila melanogaster, GI18859837, Length=247, Percent_Identity=30.3643724696356, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI17737361, Length=259, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=8e-16, Organism=Drosophila melanogaster, GI24644337, Length=177, Percent_Identity=31.0734463276836, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24640492, Length=191, Percent_Identity=27.2251308900524, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=31.3725490196078, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 26427; Mature: 26296
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKVAVITGAASGIGQALVVAFARQGVAVAGGFYPADPHDPDETRRLVAEAGGECLMLP CCCEEEEEECCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEE LDVTFTESVDDLAAQAVKAFGRIDYAVANAGLLRRAPLLEMTDERWNEMLDVDLTGVMRT ECCEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHH FRAAVRHMGEGGALVAISSIAGGVYGWQDHSHYAAAKAGVPGLCRSLAVELAAKGIRCNA HHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCEECC VIPGLIETPQSLDSTNSLGPEGLAQAAKAIPLGRVGRADEVAALVRFLCSDEASYLTGQS CCCCHHCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCE IVIDGGLTVRWPE EEEECCEEEECCC >Mature Secondary Structure TRKVAVITGAASGIGQALVVAFARQGVAVAGGFYPADPHDPDETRRLVAEAGGECLMLP CCEEEEEECCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEE LDVTFTESVDDLAAQAVKAFGRIDYAVANAGLLRRAPLLEMTDERWNEMLDVDLTGVMRT ECCEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCHHHHHHHH FRAAVRHMGEGGALVAISSIAGGVYGWQDHSHYAAAKAGVPGLCRSLAVELAAKGIRCNA HHHHHHHCCCCCCEEEEHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCEECC VIPGLIETPQSLDSTNSLGPEGLAQAAKAIPLGRVGRADEVAALVRFLCSDEASYLTGQS CCCCHHCCCHHHCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCE IVIDGGLTVRWPE EEEECCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]