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The map label for this gene is lhr [C]

Identifier: 66047107

GI number: 66047107

Start: 4620466

End: 4622958

Strand: Direct

Name: lhr [C]

Synonym: Psyr_3880

Alternate gene names: 66047107

Gene position: 4620466-4622958 (Clockwise)

Preceding gene: 66047106

Following gene: 66047108

Centisome position: 75.82

GC content: 63.94

Gene sequence:

>2493_bases
ATGAGCAGACCCACCGATTTCGCTCGACGATGGTTTCTCGCCCGGGGCTGGAAGCCCTTTGCGTTTCAGAAAGAGGTCTG
GGCAGCGGTGAAGAATGGCGAGTCCGGTTTGCTGCATGCCAGCACCGGCTCGGGCAAGACCTACGCCGTGTGGTTCGCCG
CGCTCAACCGCTTCGCCAAAGCCAATACGCTCACCGCTGACAACAAACCCCGCAAACGCAAACCGCCTGCTGAACCGCTG
AGTGTCCTGTGGATAACGCCCATGCGCGCCCTGGCCGCCGATACCGCCCGGGCCCTTGAGGCGCCACTGGCCGAACTGGA
TATCCCTTGGTCGGTCGGCTTGCGCACCGGCGATACCAGCGGCAGTGAACGCGCCCGGCAGAGCCGGCGGCTGCCCTCGG
CCTTGATCACCACCCCTGAAAGCCTGACGCTGCTGCTGACCCGTGCCGACGCTCAGGTCGCCTTGTCGACGCTGAAGATG
GTGGTGGTGGACGAATGGCACGAGCTGATCGGCAACAAGCGTGGCGTGCAGTTGCAACTGGCCCTTGCCCGCCTGAGGCG
CTGGAATCCACAGCTGATCGTGTGGGGCATTTCCGCGACGCTGGGTAATCAGCAACACGCGCAGCAGGTGCTGATCGGCG
ACGGCGGCGTGACCGTGCAAGGCAAGATCGTCAAGGACTTGCAGGTCGATACGCTGTTGCCGTCTTCCATCGAACGCTTC
CCGTGGGCCGGGCACATGGGCTTGCGCATGTTGCCGCAGGTCGTCGCCGAGGTGGAAAGCAGCGCGAGCTGTCTGGTGTT
CACCAACACCCGGGCGCAGTCGGAAATATGGTATCAGGCGCTACTGGAGGCCCGCCCCGACTGGGCCGGGCTGATTGCCC
TGCACCATGGATCGCTGGCCCGAGAGGTCCGCGACTGGGTCGAACGCGCGTTGAAAGAAGGCGCACTCAAGGCCGTGGTA
TGCACCTCCAGCCTGGACCTGGGCGTGGACTTTCTGCCGGTCGAGCGCGTGTTGCAAATCGGCTCGCCCAAAGGTGTCGC
GCGCCTGATGCAGCGCGCCGGTCGTTCGGGCCACGCGCCGGGTCGCCCTTCGCGCGTGACGCTGGTGCCGACCCACAGCC
TGGAACTGGTCGAAGCCGCTGCTGCACATGACGCCGTCGAAGCTCGGATGATCGAGCCCCGTGAGTCACCACACCAGCCG
CTGGACGTGCTGGTCCAGCACCTGGTCAGCATCGCCCTGGGCGGTGGTTTTCTGCCCGATGAACTGCTGGGCGAAGTACG
CAGCGCCTGGGCTTACCACGACCTCAGCGACGAGCAATGGCAATGGGCGCTGGCGTTTGTCCGCAACGGCGGCCACTCAC
TGACCGCCTACCCCGATTACCGCCGCGCCGAACCCGACGAGGACGGCGTCTGGCGGGTCCCTGATGCGCGTCTTGCCAGA
CGCCACCGCATGAGCGTGGGGACCATCGTCAGTGAGGCCACCGTCAACCTGAAATACTGGAAAAAAGGCGGCGGTGGTGG
CTCTCTGGGCAGCGTCGAGGAAGGCTTTATCGCCAGACTCAAACCCGGTGACGGCTTTCTGTTCGGCGGACGCTTACTGG
AATTGGTTCGAGTAGAAAACATGACGGCCTACGTCAAGCGCGCGACCGGCAAGAAAGCCGCCGTGCCACGCTGGAATGGC
GGTCGGATGCCGCTGTCCAGCGAACTGGCAGATGCAGTGGTGGAGAAGTTCGATGCCGCTGCGCGGGGCCAATTCAACAG
CCCGGAAATGCGCGCCATCAAACCCCTGCTGGAAGTGCAGCAGCACTGGTCAGGGCTGCCGAGACGCGACACGTTGCTGG
CCGAGACACTCAAATCCCGCGAAGGCTGGCATCTATTCCTCTACCCGTTCGCCGGCCGTCATGTGCACCTGGGGCTGGGC
AGCCTGCTGGCCTGGCGCCTGAGCCGGCATCGGCCGCTGACCTTTTCCATCGCCGTCAACGACTACGGGCTGGAGCTGCT
CAGCGCCAGCGAGATCGACTGGTCGCAGACGTTGCAGGCCGAGCTGTTCAGCGAAACGGATCTTTTACCCGATATCATCG
CCAGCCTGAACGCTGGCGAGCTGGCCCTGCGGCGCTTTCGGGAAATCGCGCGTATCTCCGGGTTGGTGTTTTCCGGCTAC
CCTGGCGCGGCCAAGAGCAATCGTCAGCTTCAGGCATCCAGCGGACTGTTTTTCGAGGTGTTCAAGCAATACGACGCTGA
CAACATGCTGCTGACTCAGGCCGAACAGGAGGTCCTGCGTCAGGAACTGGACCTGCAGCGCCTGGAGCTGACGTTGCGCC
AGATCAACAGCCGCACGCTGGACCTGCACGCTATAAAACGCGCGACCCCGCTGGCCTTTCCACTGCTGGTCGAACGCTTT
CGCGAAAGCCTCAGTTCGGAGAAACTTGCCGACCGCATCGCGCGCATGGTTCGCGATCTGGAGAAAGCCGCTGGCCCGGA
GCCTGAACGATGA

Upstream 100 bases:

>100_bases
ACGATAGTCAATCCAGGAACGATCAGCCACATAACCATTTAAACTATTACCCTTTCTCTGCTGTCTCTGACTTAACGCCA
CTCAGAGCACACTCAGACGG

Downstream 100 bases:

>100_bases
CGCCGTATCTTGCTGTCACGCTGGCAGGAGAAGAACTGTGGTTGCTGGCCGACAAGGCCATCTACTACCCTGCCGAACGA
TCCTTGCTGATTGCCGACGC

Product: helicase, C-terminal:DEAD/DEAH box helicase, N-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 830; Mature: 829

Protein sequence:

>830_residues
MSRPTDFARRWFLARGWKPFAFQKEVWAAVKNGESGLLHASTGSGKTYAVWFAALNRFAKANTLTADNKPRKRKPPAEPL
SVLWITPMRALAADTARALEAPLAELDIPWSVGLRTGDTSGSERARQSRRLPSALITTPESLTLLLTRADAQVALSTLKM
VVVDEWHELIGNKRGVQLQLALARLRRWNPQLIVWGISATLGNQQHAQQVLIGDGGVTVQGKIVKDLQVDTLLPSSIERF
PWAGHMGLRMLPQVVAEVESSASCLVFTNTRAQSEIWYQALLEARPDWAGLIALHHGSLAREVRDWVERALKEGALKAVV
CTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRPSRVTLVPTHSLELVEAAAAHDAVEARMIEPRESPHQP
LDVLVQHLVSIALGGGFLPDELLGEVRSAWAYHDLSDEQWQWALAFVRNGGHSLTAYPDYRRAEPDEDGVWRVPDARLAR
RHRMSVGTIVSEATVNLKYWKKGGGGGSLGSVEEGFIARLKPGDGFLFGGRLLELVRVENMTAYVKRATGKKAAVPRWNG
GRMPLSSELADAVVEKFDAAARGQFNSPEMRAIKPLLEVQQHWSGLPRRDTLLAETLKSREGWHLFLYPFAGRHVHLGLG
SLLAWRLSRHRPLTFSIAVNDYGLELLSASEIDWSQTLQAELFSETDLLPDIIASLNAGELALRRFREIARISGLVFSGY
PGAAKSNRQLQASSGLFFEVFKQYDADNMLLTQAEQEVLRQELDLQRLELTLRQINSRTLDLHAIKRATPLAFPLLVERF
RESLSSEKLADRIARMVRDLEKAAGPEPER

Sequences:

>Translated_830_residues
MSRPTDFARRWFLARGWKPFAFQKEVWAAVKNGESGLLHASTGSGKTYAVWFAALNRFAKANTLTADNKPRKRKPPAEPL
SVLWITPMRALAADTARALEAPLAELDIPWSVGLRTGDTSGSERARQSRRLPSALITTPESLTLLLTRADAQVALSTLKM
VVVDEWHELIGNKRGVQLQLALARLRRWNPQLIVWGISATLGNQQHAQQVLIGDGGVTVQGKIVKDLQVDTLLPSSIERF
PWAGHMGLRMLPQVVAEVESSASCLVFTNTRAQSEIWYQALLEARPDWAGLIALHHGSLAREVRDWVERALKEGALKAVV
CTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRPSRVTLVPTHSLELVEAAAAHDAVEARMIEPRESPHQP
LDVLVQHLVSIALGGGFLPDELLGEVRSAWAYHDLSDEQWQWALAFVRNGGHSLTAYPDYRRAEPDEDGVWRVPDARLAR
RHRMSVGTIVSEATVNLKYWKKGGGGGSLGSVEEGFIARLKPGDGFLFGGRLLELVRVENMTAYVKRATGKKAAVPRWNG
GRMPLSSELADAVVEKFDAAARGQFNSPEMRAIKPLLEVQQHWSGLPRRDTLLAETLKSREGWHLFLYPFAGRHVHLGLG
SLLAWRLSRHRPLTFSIAVNDYGLELLSASEIDWSQTLQAELFSETDLLPDIIASLNAGELALRRFREIARISGLVFSGY
PGAAKSNRQLQASSGLFFEVFKQYDADNMLLTQAEQEVLRQELDLQRLELTLRQINSRTLDLHAIKRATPLAFPLLVERF
RESLSSEKLADRIARMVRDLEKAAGPEPER
>Mature_829_residues
SRPTDFARRWFLARGWKPFAFQKEVWAAVKNGESGLLHASTGSGKTYAVWFAALNRFAKANTLTADNKPRKRKPPAEPLS
VLWITPMRALAADTARALEAPLAELDIPWSVGLRTGDTSGSERARQSRRLPSALITTPESLTLLLTRADAQVALSTLKMV
VVDEWHELIGNKRGVQLQLALARLRRWNPQLIVWGISATLGNQQHAQQVLIGDGGVTVQGKIVKDLQVDTLLPSSIERFP
WAGHMGLRMLPQVVAEVESSASCLVFTNTRAQSEIWYQALLEARPDWAGLIALHHGSLAREVRDWVERALKEGALKAVVC
TSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAPGRPSRVTLVPTHSLELVEAAAAHDAVEARMIEPRESPHQPL
DVLVQHLVSIALGGGFLPDELLGEVRSAWAYHDLSDEQWQWALAFVRNGGHSLTAYPDYRRAEPDEDGVWRVPDARLARR
HRMSVGTIVSEATVNLKYWKKGGGGGSLGSVEEGFIARLKPGDGFLFGGRLLELVRVENMTAYVKRATGKKAAVPRWNGG
RMPLSSELADAVVEKFDAAARGQFNSPEMRAIKPLLEVQQHWSGLPRRDTLLAETLKSREGWHLFLYPFAGRHVHLGLGS
LLAWRLSRHRPLTFSIAVNDYGLELLSASEIDWSQTLQAELFSETDLLPDIIASLNAGELALRRFREIARISGLVFSGYP
GAAKSNRQLQASSGLFFEVFKQYDADNMLLTQAEQEVLRQELDLQRLELTLRQINSRTLDLHAIKRATPLAFPLLVERFR
ESLSSEKLADRIARMVRDLEKAAGPEPER

Specific function: Unknown

COG id: COG1201

COG function: function code R; Lhr-like helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1787942, Length=865, Percent_Identity=28.4393063583815, Blast_Score=232, Evalue=9e-62,
Organism=Saccharomyces cerevisiae, GI6320497, Length=363, Percent_Identity=26.1707988980716, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR013701
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR014021
- InterPro:   IPR017170 [H]

Pfam domain/function: PF00270 DEAD; PF08494 DEAD_assoc; PF00271 Helicase_C [H]

EC number: 3.6.1.-

Molecular weight: Translated: 92124; Mature: 91992

Theoretical pI: Translated: 9.92; Mature: 9.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRPTDFARRWFLARGWKPFAFQKEVWAAVKNGESGLLHASTGSGKTYAVWFAALNRFAK
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHH
ANTLTADNKPRKRKPPAEPLSVLWITPMRALAADTARALEAPLAELDIPWSVGLRTGDTS
CCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCC
GSERARQSRRLPSALITTPESLTLLLTRADAQVALSTLKMVVVDEWHELIGNKRGVQLQL
CHHHHHHHHCCCHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ALARLRRWNPQLIVWGISATLGNQQHAQQVLIGDGGVTVQGKIVKDLQVDTLLPSSIERF
HHHHHHCCCCCEEEEEECHHHCCHHHHCEEEEECCCEEEEEEEEECCCHHHCCCHHHHHC
PWAGHMGLRMLPQVVAEVESSASCLVFTNTRAQSEIWYQALLEARPDWAGLIALHHGSLA
CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCHHH
REVRDWVERALKEGALKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAP
HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
GRPSRVTLVPTHSLELVEAAAAHDAVEARMIEPRESPHQPLDVLVQHLVSIALGGGFLPD
CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
ELLGEVRSAWAYHDLSDEQWQWALAFVRNGGHSLTAYPDYRRAEPDEDGVWRVPDARLAR
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCHHHHH
RHRMSVGTIVSEATVNLKYWKKGGGGGSLGSVEEGFIARLKPGDGFLFGGRLLELVRVEN
HHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHH
MTAYVKRATGKKAAVPRWNGGRMPLSSELADAVVEKFDAAARGQFNSPEMRAIKPLLEVQ
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
QHWSGLPRRDTLLAETLKSREGWHLFLYPFAGRHVHLGLGSLLAWRLSRHRPLTFSIAVN
HHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEECHHHHHHHHHHCCCCEEEEEEEC
DYGLELLSASEIDWSQTLQAELFSETDLLPDIIASLNAGELALRRFREIARISGLVFSGY
CCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECC
PGAAKSNRQLQASSGLFFEVFKQYDADNMLLTQAEQEVLRQELDLQRLELTLRQINSRTL
CCCCCCCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
DLHAIKRATPLAFPLLVERFRESLSSEKLADRIARMVRDLEKAAGPEPER
EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SRPTDFARRWFLARGWKPFAFQKEVWAAVKNGESGLLHASTGSGKTYAVWFAALNRFAK
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCEEEHHHHHHHHHHH
ANTLTADNKPRKRKPPAEPLSVLWITPMRALAADTARALEAPLAELDIPWSVGLRTGDTS
CCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCC
GSERARQSRRLPSALITTPESLTLLLTRADAQVALSTLKMVVVDEWHELIGNKRGVQLQL
CHHHHHHHHCCCHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ALARLRRWNPQLIVWGISATLGNQQHAQQVLIGDGGVTVQGKIVKDLQVDTLLPSSIERF
HHHHHHCCCCCEEEEEECHHHCCHHHHCEEEEECCCEEEEEEEEECCCHHHCCCHHHHHC
PWAGHMGLRMLPQVVAEVESSASCLVFTNTRAQSEIWYQALLEARPDWAGLIALHHGSLA
CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCHHH
REVRDWVERALKEGALKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLMQRAGRSGHAP
HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
GRPSRVTLVPTHSLELVEAAAAHDAVEARMIEPRESPHQPLDVLVQHLVSIALGGGFLPD
CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCH
ELLGEVRSAWAYHDLSDEQWQWALAFVRNGGHSLTAYPDYRRAEPDEDGVWRVPDARLAR
HHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEECCCHHHHH
RHRMSVGTIVSEATVNLKYWKKGGGGGSLGSVEEGFIARLKPGDGFLFGGRLLELVRVEN
HHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEEHHHHHHHHHHHH
MTAYVKRATGKKAAVPRWNGGRMPLSSELADAVVEKFDAAARGQFNSPEMRAIKPLLEVQ
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
QHWSGLPRRDTLLAETLKSREGWHLFLYPFAGRHVHLGLGSLLAWRLSRHRPLTFSIAVN
HHHCCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEECHHHHHHHHHHCCCCEEEEEEEC
DYGLELLSASEIDWSQTLQAELFSETDLLPDIIASLNAGELALRRFREIARISGLVFSGY
CCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECC
PGAAKSNRQLQASSGLFFEVFKQYDADNMLLTQAEQEVLRQELDLQRLELTLRQINSRTL
CCCCCCCCCEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
DLHAIKRATPLAFPLLVERFRESLSSEKLADRIARMVRDLEKAAGPEPER
EHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on acid anhydrides [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]