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The map label for this gene is cobB [H]

Identifier: 66046909

GI number: 66046909

Start: 4365985

End: 4367280

Strand: Reverse

Name: cobB [H]

Synonym: Psyr_3680

Alternate gene names: 66046909

Gene position: 4367280-4365985 (Counterclockwise)

Preceding gene: 66046910

Following gene: 66046908

Centisome position: 71.67

GC content: 66.05

Gene sequence:

>1296_bases
ATGAGAGCCCCGCGTGATTGCCCGGCGGTACTGATCGCTGCGCCTGCCTCCGGGCAAGGCAAAACCACGGTGACCGCTGC
ACTGGCACGCCTGCACCGCAACCAGGGGCACAAGGTCCGGGTGTTCAAGTGCGGCCCGGACTTTCTCGACCCGATGATTC
TCGAGCGGGCCAGTGGCGCGCCGGTCTATCAACTCGACATGTGGATGGTCGGTGCCGATGAAAGCCGTCGCCTGTTGTGG
GAAGCGGCTGACGAGGCCGACCTGATTCTGATCGAAGGGGTCATGGGCCTGTTCGATGGCACGCCGTCGAGCGCCGACCT
GGCCCGGCATTTTGGCGTGCCGGTACTCGGTGTGATCGACGGCACGGCCATGGCGCAGACGTTTGGCGCACTGGCGCTGG
GCCTGGCGCGCTATCAGCCTGATCTGCCGTTCGCCGGCGTGCTGGCCAATCGCGTCGGCACGGTACGCCATGCGCAGTTG
CTGGAGAACAGCCTGACCGAAGGCCTGCGCTGGTACGGCGCCCTGTCCCGGGAGGTCGGCTTCGAATTGCCCAGCCGCCA
TCTGGGGCTGGTCCAGGCCAGTGAGCTCAATGATCTGGACGTGCGTCTGGACATGGCGGCTGCGGCGCTGGCCAGCACCT
GCGAAGTGGCCTTGCCGCCGGCCGTGACCTTTACTGCGCCCGACCCGGTGCAGGTCGAGCCGCTGCTGCGCGGCATCCGC
ATCGCCATCGCGCGCGACGAAGCCTTTGCCTTTCTGTATGGCGCGAGCCTGGACCTGCTGAGGAACATGGGCGCCGAACT
GAGCTTCTTCTCGCCGATCCATGATCGCGAGCTGCCCGACGCCGACAGCCTGTACCTGCCAGGCGGCTACCCGGAGCTGC
ACCACGTCGCGCTGGCCGCCAATGGCACGATGCAGGCTTCGATCAGGGCTCACCATATTGCCGGCAAGCCGATTCTCGCC
GAGTGCGGCGGCATGCTCTATTTGCTCGAAGCCTTGACCGATGTCGAGGGCGTGCGCGCCGAACTGGTCGGCTTGCTGTC
CGGTGAAGCGGTCATGCAGAAGCGTCTGGCCGCGCTGGCCTTGCAAGCCGTCGAGCTGCCCGAGGGCACGCTGCACGGTC
ACACTTATCACCATTCGCTGACCAGCACCGAGCTGCAGCCGATTGCGCGTGGCGTCAGCCCCAATGGCGGGCGCGGCGCA
GAAGCGGTCTATCGCCTGGGTCGCCTGACCGCGTCCTACGTGCATTTCTATTTTCCTTCCTGCCCTCAGGCGATCGCGGC
GCTGTTCAAACCATGA

Upstream 100 bases:

>100_bases
ACTGTTTCCGAGATCGGCGTGGTCAAGCACGCGTTTCAGGCCGGTATTCGTGCGCAGAAAGGTATCGAGCTGTGAACCCT
TCATCATTGAGCGCATTGCA

Downstream 100 bases:

>100_bases
CCGAGCAAGCGTTCAGCCCCGAAGAGCGGGCTGCGGTGTACCGCGCCATCGCCGAACGTCGCGACATGCGCCACTTCATC
GGCGGCACGGTCGCGCCCGA

Product: cobyrinic acid a,c-diamide synthase

Products: ADP; phosphate; Hydrogenobyrinic acid a,c diamide; L-glutamate

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MRAPRDCPAVLIAAPASGQGKTTVTAALARLHRNQGHKVRVFKCGPDFLDPMILERASGAPVYQLDMWMVGADESRRLLW
EAADEADLILIEGVMGLFDGTPSSADLARHFGVPVLGVIDGTAMAQTFGALALGLARYQPDLPFAGVLANRVGTVRHAQL
LENSLTEGLRWYGALSREVGFELPSRHLGLVQASELNDLDVRLDMAAAALASTCEVALPPAVTFTAPDPVQVEPLLRGIR
IAIARDEAFAFLYGASLDLLRNMGAELSFFSPIHDRELPDADSLYLPGGYPELHHVALAANGTMQASIRAHHIAGKPILA
ECGGMLYLLEALTDVEGVRAELVGLLSGEAVMQKRLAALALQAVELPEGTLHGHTYHHSLTSTELQPIARGVSPNGGRGA
EAVYRLGRLTASYVHFYFPSCPQAIAALFKP

Sequences:

>Translated_431_residues
MRAPRDCPAVLIAAPASGQGKTTVTAALARLHRNQGHKVRVFKCGPDFLDPMILERASGAPVYQLDMWMVGADESRRLLW
EAADEADLILIEGVMGLFDGTPSSADLARHFGVPVLGVIDGTAMAQTFGALALGLARYQPDLPFAGVLANRVGTVRHAQL
LENSLTEGLRWYGALSREVGFELPSRHLGLVQASELNDLDVRLDMAAAALASTCEVALPPAVTFTAPDPVQVEPLLRGIR
IAIARDEAFAFLYGASLDLLRNMGAELSFFSPIHDRELPDADSLYLPGGYPELHHVALAANGTMQASIRAHHIAGKPILA
ECGGMLYLLEALTDVEGVRAELVGLLSGEAVMQKRLAALALQAVELPEGTLHGHTYHHSLTSTELQPIARGVSPNGGRGA
EAVYRLGRLTASYVHFYFPSCPQAIAALFKP
>Mature_431_residues
MRAPRDCPAVLIAAPASGQGKTTVTAALARLHRNQGHKVRVFKCGPDFLDPMILERASGAPVYQLDMWMVGADESRRLLW
EAADEADLILIEGVMGLFDGTPSSADLARHFGVPVLGVIDGTAMAQTFGALALGLARYQPDLPFAGVLANRVGTVRHAQL
LENSLTEGLRWYGALSREVGFELPSRHLGLVQASELNDLDVRLDMAAAALASTCEVALPPAVTFTAPDPVQVEPLLRGIR
IAIARDEAFAFLYGASLDLLRNMGAELSFFSPIHDRELPDADSLYLPGGYPELHHVALAANGTMQASIRAHHIAGKPILA
ECGGMLYLLEALTDVEGVRAELVGLLSGEAVMQKRLAALALQAVELPEGTLHGHTYHHSLTSTELQPIARGVSPNGGRGA
EAVYRLGRLTASYVHFYFPSCPQAIAALFKP

Specific function: Responsible for the amidation of carboxylic groups at position A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation [H]

COG id: COG1797

COG function: function code H; Cobyrinic acid a,c-diamide synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GATase cobBQ-type domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR004484
- InterPro:   IPR017929
- InterPro:   IPR011698 [H]

Pfam domain/function: PF01656 CbiA; PF07685 GATase_3 [H]

EC number: 6.3.5.9

Molecular weight: Translated: 46112; Mature: 46112

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPRDCPAVLIAAPASGQGKTTVTAALARLHRNQGHKVRVFKCGPDFLDPMILERASGA
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHCHHHHHHCCCC
PVYQLDMWMVGADESRRLLWEAADEADLILIEGVMGLFDGTPSSADLARHFGVPVLGVID
CEEEEEEEEECCCCCHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHHHCCCCEEEEEC
GTAMAQTFGALALGLARYQPDLPFAGVLANRVGTVRHAQLLENSLTEGLRWYGALSREVG
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FELPSRHLGLVQASELNDLDVRLDMAAAALASTCEVALPPAVTFTAPDPVQVEPLLRGIR
CCCCCCCCCEEEECCCCCCCEEHHHHHHHHHHHCCEECCCEEEECCCCCCCHHHHHCCEE
IAIARDEAFAFLYGASLDLLRNMGAELSFFSPIHDRELPDADSLYLPGGYPELHHVALAA
EEEECCCEEEEEECCHHHHHHHCCCCEEECCCCCCCCCCCCCCEECCCCCCHHEEEEEEE
NGTMQASIRAHHIAGKPILAECGGMLYLLEALTDVEGVRAELVGLLSGEAVMQKRLAALA
CCCEEEEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LQAVELPEGTLHGHTYHHSLTSTELQPIARGVSPNGGRGAEAVYRLGRLTASYVHFYFPS
HHHHCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEECCC
CPQAIAALFKP
CHHHHHHHHCC
>Mature Secondary Structure
MRAPRDCPAVLIAAPASGQGKTTVTAALARLHRNQGHKVRVFKCGPDFLDPMILERASGA
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHCHHHHHHCCCC
PVYQLDMWMVGADESRRLLWEAADEADLILIEGVMGLFDGTPSSADLARHFGVPVLGVID
CEEEEEEEEECCCCCHHHHHCCCCCCCEEEEECHHHHHCCCCCHHHHHHHCCCCEEEEEC
GTAMAQTFGALALGLARYQPDLPFAGVLANRVGTVRHAQLLENSLTEGLRWYGALSREVG
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FELPSRHLGLVQASELNDLDVRLDMAAAALASTCEVALPPAVTFTAPDPVQVEPLLRGIR
CCCCCCCCCEEEECCCCCCCEEHHHHHHHHHHHCCEECCCEEEECCCCCCCHHHHHCCEE
IAIARDEAFAFLYGASLDLLRNMGAELSFFSPIHDRELPDADSLYLPGGYPELHHVALAA
EEEECCCEEEEEECCHHHHHHHCCCCEEECCCCCCCCCCCCCCEECCCCCCHHEEEEEEE
NGTMQASIRAHHIAGKPILAECGGMLYLLEALTDVEGVRAELVGLLSGEAVMQKRLAALA
CCCEEEEEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
LQAVELPEGTLHGHTYHHSLTSTELQPIARGVSPNGGRGAEAVYRLGRLTASYVHFYFPS
HHHHCCCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHEECCC
CPQAIAALFKP
CHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; hydrogenobyrinic acid; L-glutamine; H2O

Specific reaction: 2 ATP + hydrogenobyrinic acid + 2 L-glutamine + 2 H2O = 2 ADP + 2 phosphate + hydrogenobyrinic acid a,c-diamide + 2 L-glutamate

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA