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The map label for this gene is ydjA [H]

Identifier: 66046821

GI number: 66046821

Start: 4273463

End: 4274023

Strand: Reverse

Name: ydjA [H]

Synonym: Psyr_3592

Alternate gene names: 66046821

Gene position: 4274023-4273463 (Counterclockwise)

Preceding gene: 66046824

Following gene: 66046815

Centisome position: 70.14

GC content: 63.81

Gene sequence:

>561_bases
ATGCAGGCGCTCGACGTTTTGCTCAATCGTGTATCGGTTCCACGACTGGTCGACCCGGCCCCGGACGCTGCGCAGCGGGA
AATCCTGTTCGGTGCCGCATTGCGCGCCCCGGATCATGGACAGCTCAAGCCGTATCGTTTTCTGACGGTCGAAGGCGCGG
CCCGTGAGCGCATGGGCGAGATGCTGGCGCAGGCGCTGCAGGAGAGTGGCGCAGAAGTTACCCCGCAGGCGCTGGAAAAG
GCCCGTCTTGGCCCGTTTCGCGCACCCTTGGTGGTGGTCGTGATCGCGCGCTTGCAGGACCACTTCAAAGTCCCGCACTC
AGAACAACGGATCACCGCCGGATGCGCCGCCCATGGTGTGTTGCTGGCAGCTTATGCACTGGGTATCGGTGCGGTCTGGA
GGACTGGCGAGCTGTCCTATGCGCCGCAGGTAGCCAAAGGCTTCGGCCTTGAAGCCGGCGAAGAAGTGCTCGGCTTTCTG
TATCTGGGCACCCCGCTGAACCCGCCGCGCGAAGCACCAAAAGTCGATACGGGCGGGTTTGTCAGCGAGTGGCAGGGCTG
A

Upstream 100 bases:

>100_bases
GGACCGGCTGCAAGCGCAGAGGTAACGAATTGTCCGTCGCACTCGTTATTGACGCTAAACAGGCTCTAGAATGCTCGATC
ACTTTTCAAGGAGACAGTCC

Downstream 100 bases:

>100_bases
TCAGACCGACGATGAACCGAGCGGCTCTCTGGGCAGATCCAGCGTGGCGATAAACCCGCCGTCCGGGTGATTGCCCAACA
TCAGAGTGCCGCCATGTCGT

Product: nitroreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MQALDVLLNRVSVPRLVDPAPDAAQREILFGAALRAPDHGQLKPYRFLTVEGAARERMGEMLAQALQESGAEVTPQALEK
ARLGPFRAPLVVVVIARLQDHFKVPHSEQRITAGCAAHGVLLAAYALGIGAVWRTGELSYAPQVAKGFGLEAGEEVLGFL
YLGTPLNPPREAPKVDTGGFVSEWQG

Sequences:

>Translated_186_residues
MQALDVLLNRVSVPRLVDPAPDAAQREILFGAALRAPDHGQLKPYRFLTVEGAARERMGEMLAQALQESGAEVTPQALEK
ARLGPFRAPLVVVVIARLQDHFKVPHSEQRITAGCAAHGVLLAAYALGIGAVWRTGELSYAPQVAKGFGLEAGEEVLGFL
YLGTPLNPPREAPKVDTGGFVSEWQG
>Mature_186_residues
MQALDVLLNRVSVPRLVDPAPDAAQREILFGAALRAPDHGQLKPYRFLTVEGAARERMGEMLAQALQESGAEVTPQALEK
ARLGPFRAPLVVVVIARLQDHFKVPHSEQRITAGCAAHGVLLAAYALGIGAVWRTGELSYAPQVAKGFGLEAGEEVLGFL
YLGTPLNPPREAPKVDTGGFVSEWQG

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1788063, Length=165, Percent_Identity=43.030303030303, Blast_Score=153, Evalue=6e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: NA

Molecular weight: Translated: 19943; Mature: 19943

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALDVLLNRVSVPRLVDPAPDAAQREILFGAALRAPDHGQLKPYRFLTVEGAARERMGE
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHH
MLAQALQESGAEVTPQALEKARLGPFRAPLVVVVIARLQDHFKVPHSEQRITAGCAAHGV
HHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
LLAAYALGIGAVWRTGELSYAPQVAKGFGLEAGEEVLGFLYLGTPLNPPREAPKVDTGGF
HHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VSEWQG
HHCCCC
>Mature Secondary Structure
MQALDVLLNRVSVPRLVDPAPDAAQREILFGAALRAPDHGQLKPYRFLTVEGAARERMGE
CHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHH
MLAQALQESGAEVTPQALEKARLGPFRAPLVVVVIARLQDHFKVPHSEQRITAGCAAHGV
HHHHHHHHCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
LLAAYALGIGAVWRTGELSYAPQVAKGFGLEAGEEVLGFLYLGTPLNPPREAPKVDTGGF
HHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
VSEWQG
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]