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The map label for this gene is yqhC [H]

Identifier: 66046772

GI number: 66046772

Start: 4220788

End: 4221675

Strand: Direct

Name: yqhC [H]

Synonym: Psyr_3543

Alternate gene names: 66046772

Gene position: 4220788-4221675 (Clockwise)

Preceding gene: 66046770

Following gene: 66046775

Centisome position: 69.26

GC content: 61.15

Gene sequence:

>888_bases
ATGGAGAAATCATTGGCAGAACTGCGCTGCATCGTGATGCGCGCACAGGACAAGTGGACCGACACCGGGTTGCCTCGGGT
GTCAATGGTCCGGGCCGAGGCCTGTGCGGATCAGGTCTATCAGCCGATGCTGCACTTGGTGCTTCAAGGCACCAAGACCC
TGTCGATCGGCGAAGATGCGTCCAGATACACCGCGGGGCACTACTTTCTGGTGCCTGTCGATGTGCCTGCGACGGGGCAG
ATTCACGCCGACACGCCGGACAAACCTTATCTTGCGGTCAGCCTGACCCTCGATCCGGAAGTAATCGCCACGCTGCTGAT
GGCCGAAGGCAGAGCACCTGAAGCGCCCCAGAACGCCTGCTTCGAGGGCGTCATCGCGCCAGATGAAATGATCGATGCGT
GGTTGCGCATGCTGCGACTCATGGACCGCCCGCACGAAGCCGCAATCCTCGCGCCCATGATCGAACGGGAGATTCTGTTC
CGGGCCTTGCAGGGACCACTGGGCGGCATTCTTCGTGACGTTGCACGCCCGGATGGCCGACTGACGCAGATCCGCCGCGT
CACCCAGTGGATTGGTGAGCACTACACCGAGCCCTTTCGCGTCGAACCGCTCGCGCAGATGGCCGACATGAGTGTTGCTG
CCTTTTACAGGCACTTCAAATCCGTCACAGCGATGAGCCCGATTCAATATCAGAAGCGCCTGCGCCTGTTGAAGGCGCGC
TGGTTGCTGCTCTTCGACACACTGGATGCGACCTCCATCGCTTATGCCGTAGGGTACGAAAGCGCTTCGCAATTCAACCG
GGAGTACGCGCGGCTGTTCGGCCTGCCACCGGCGCGGGACGCTGCAAGATTCAGGACGCCCGCAGATGAATTGACGGCCG
TGTCGTGA

Upstream 100 bases:

>100_bases
GGCCATCGAGGGGCACAACGTTTGCCGGTTAGTCGCAGATCCTTGCCTGTTCCTCTCAAGTTGCTTGCCATGCCTCGGGA
TATGGCCCACGGTGGCCTGT

Downstream 100 bases:

>100_bases
GCCGTCGCCCCAGTTGTTACATGTCAGTCACGAGCGTACCGGCAATGCTCTCGGCGAAACCGCCACCGAAGACCTTGGCC
GGTGTGACAAAACCCGGCAG

Product: helix-turn-helix, AraC type:AraC-type transcriptional regulator, N-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MEKSLAELRCIVMRAQDKWTDTGLPRVSMVRAEACADQVYQPMLHLVLQGTKTLSIGEDASRYTAGHYFLVPVDVPATGQ
IHADTPDKPYLAVSLTLDPEVIATLLMAEGRAPEAPQNACFEGVIAPDEMIDAWLRMLRLMDRPHEAAILAPMIEREILF
RALQGPLGGILRDVARPDGRLTQIRRVTQWIGEHYTEPFRVEPLAQMADMSVAAFYRHFKSVTAMSPIQYQKRLRLLKAR
WLLLFDTLDATSIAYAVGYESASQFNREYARLFGLPPARDAARFRTPADELTAVS

Sequences:

>Translated_295_residues
MEKSLAELRCIVMRAQDKWTDTGLPRVSMVRAEACADQVYQPMLHLVLQGTKTLSIGEDASRYTAGHYFLVPVDVPATGQ
IHADTPDKPYLAVSLTLDPEVIATLLMAEGRAPEAPQNACFEGVIAPDEMIDAWLRMLRLMDRPHEAAILAPMIEREILF
RALQGPLGGILRDVARPDGRLTQIRRVTQWIGEHYTEPFRVEPLAQMADMSVAAFYRHFKSVTAMSPIQYQKRLRLLKAR
WLLLFDTLDATSIAYAVGYESASQFNREYARLFGLPPARDAARFRTPADELTAVS
>Mature_295_residues
MEKSLAELRCIVMRAQDKWTDTGLPRVSMVRAEACADQVYQPMLHLVLQGTKTLSIGEDASRYTAGHYFLVPVDVPATGQ
IHADTPDKPYLAVSLTLDPEVIATLLMAEGRAPEAPQNACFEGVIAPDEMIDAWLRMLRLMDRPHEAAILAPMIEREILF
RALQGPLGGILRDVARPDGRLTQIRRVTQWIGEHYTEPFRVEPLAQMADMSVAAFYRHFKSVTAMSPIQYQKRLRLLKAR
WLLLFDTLDATSIAYAVGYESASQFNREYARLFGLPPARDAARFRTPADELTAVS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=250, Percent_Identity=39.6, Blast_Score=167, Evalue=7e-43,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33130; Mature: 33130

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKSLAELRCIVMRAQDKWTDTGLPRVSMVRAEACADQVYQPMLHLVLQGTKTLSIGEDA
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
SRYTAGHYFLVPVDVPATGQIHADTPDKPYLAVSLTLDPEVIATLLMAEGRAPEAPQNAC
HHEECCEEEEEEECCCCCCEEECCCCCCCEEEEEEEECHHHHHHHHHHCCCCCCCCHHHH
FEGVIAPDEMIDAWLRMLRLMDRPHEAAILAPMIEREILFRALQGPLGGILRDVARPDGR
HCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCH
LTQIRRVTQWIGEHYTEPFRVEPLAQMADMSVAAFYRHFKSVTAMSPIQYQKRLRLLKAR
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
WLLLFDTLDATSIAYAVGYESASQFNREYARLFGLPPARDAARFRTPADELTAVS
HHHHEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MEKSLAELRCIVMRAQDKWTDTGLPRVSMVRAEACADQVYQPMLHLVLQGTKTLSIGEDA
CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC
SRYTAGHYFLVPVDVPATGQIHADTPDKPYLAVSLTLDPEVIATLLMAEGRAPEAPQNAC
HHEECCEEEEEEECCCCCCEEECCCCCCCEEEEEEEECHHHHHHHHHHCCCCCCCCHHHH
FEGVIAPDEMIDAWLRMLRLMDRPHEAAILAPMIEREILFRALQGPLGGILRDVARPDGR
HCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCH
LTQIRRVTQWIGEHYTEPFRVEPLAQMADMSVAAFYRHFKSVTAMSPIQYQKRLRLLKAR
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
WLLLFDTLDATSIAYAVGYESASQFNREYARLFGLPPARDAARFRTPADELTAVS
HHHHEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]