Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

Click here to switch to the map view.

The map label for this gene is ydfG [C]

Identifier: 66046768

GI number: 66046768

Start: 4217038

End: 4217826

Strand: Direct

Name: ydfG [C]

Synonym: Psyr_3539

Alternate gene names: 66046768

Gene position: 4217038-4217826 (Clockwise)

Preceding gene: 66046767

Following gene: 66046769

Centisome position: 69.2

GC content: 61.47

Gene sequence:

>789_bases
ATGACAACGCCATCCACTGTTCTCATTACCGGTGCCTCCAGCGGCATCGGCGCGGTATATGCCGAACGATTTGCCCGTCG
CGGTCACAATCTCGTGACAGTCGCTCGTGACAAGGCACGTCTTGATGCCCTGGCGGCGCGCCTTCGTGAAGAAAACGGCG
TTGCCGTTGAAGTCATTCAGGCTGACTTGACTCGATCTGCCGACCTCACGGCTCTGGAAACCCGTCTGCGTGAGGACACC
AACATCGATGTGCTGATCAACAACGCTGGCATTGCTCAATCCGGAGGGTTCGTTCAACAGAACGCCGAGTCCATCGACAA
GCTTGTCGCACTCAATATCGTCGCCCTGACACGCCTTGCGGCCGCCGTGGCCCCGCGTTTCGCGCAGTCCGGCTCAGGCT
CGATCGTCAACCTCGGATCGGTGGTGGGCCTTGCGCCAGAGTTCGGCATGTCGGTCTACGGTGCGACCAAGGCCTATGTG
CTGTTCCTTTCCCAGGGAATGAACGTGGAACTGGCGCCCAAGGGCGTATACGTCCAGGCGGTGCTCCCGGCGGCCACCCG
TACCGAAATCTGGGAGCGCGCGGGAATCGATCTGAACACTATTGCAGAGGTGATGGACGTCGACGAACTGGTTGATGCGG
CACTGGTGGGCTACGACCGCCGCGAACAGGTGACCATTCCGCCGCTGCATGTGGCGGGTCGTTGGGACTCGCTGGATGAG
GCGCGGCAAGGGCTGTTGTCGGACATTCGACAGGCCCAGGCAGCCGAGCGCTATCGCCCGCAAGCCTGA

Upstream 100 bases:

>100_bases
AGCGTTTTTGATGTCGATCAACATCAATACGTTGACATTTTAGATTTCGATCGTAATCATAAGTGCGACTTCCTCAACGC
ACTTTACGAGTACATCCTCC

Downstream 100 bases:

>100_bases
AGCGGATCAAGCCGTGGCAGGCGTCCATCCTTGTTCGACGACACTGGAATCAGAGCGTCATGAAAGCACTGACATTCGAG
AACTACGGCAAATCGCCGGA

Product: Short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MTTPSTVLITGASSGIGAVYAERFARRGHNLVTVARDKARLDALAARLREENGVAVEVIQADLTRSADLTALETRLREDT
NIDVLINNAGIAQSGGFVQQNAESIDKLVALNIVALTRLAAAVAPRFAQSGSGSIVNLGSVVGLAPEFGMSVYGATKAYV
LFLSQGMNVELAPKGVYVQAVLPAATRTEIWERAGIDLNTIAEVMDVDELVDAALVGYDRREQVTIPPLHVAGRWDSLDE
ARQGLLSDIRQAQAAERYRPQA

Sequences:

>Translated_262_residues
MTTPSTVLITGASSGIGAVYAERFARRGHNLVTVARDKARLDALAARLREENGVAVEVIQADLTRSADLTALETRLREDT
NIDVLINNAGIAQSGGFVQQNAESIDKLVALNIVALTRLAAAVAPRFAQSGSGSIVNLGSVVGLAPEFGMSVYGATKAYV
LFLSQGMNVELAPKGVYVQAVLPAATRTEIWERAGIDLNTIAEVMDVDELVDAALVGYDRREQVTIPPLHVAGRWDSLDE
ARQGLLSDIRQAQAAERYRPQA
>Mature_261_residues
TTPSTVLITGASSGIGAVYAERFARRGHNLVTVARDKARLDALAARLREENGVAVEVIQADLTRSADLTALETRLREDTN
IDVLINNAGIAQSGGFVQQNAESIDKLVALNIVALTRLAAAVAPRFAQSGSGSIVNLGSVVGLAPEFGMSVYGATKAYVL
FLSQGMNVELAPKGVYVQAVLPAATRTEIWERAGIDLNTIAEVMDVDELVDAALVGYDRREQVTIPPLHVAGRWDSLDEA
RQGLLSDIRQAQAAERYRPQA

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI7705855, Length=187, Percent_Identity=29.9465240641711, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI226371731, Length=185, Percent_Identity=26.4864864864865, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI4557649, Length=211, Percent_Identity=29.8578199052133, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI32483357, Length=185, Percent_Identity=28.6486486486486, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI5031737, Length=185, Percent_Identity=28.1081081081081, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI33667109, Length=185, Percent_Identity=28.1081081081081, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI7705925, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=28.4153005464481, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=29.3814432989691, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI40254992, Length=207, Percent_Identity=27.536231884058, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI223718074, Length=208, Percent_Identity=30.2884615384615, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI4503817, Length=191, Percent_Identity=28.2722513089005, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI7657478, Length=190, Percent_Identity=27.8947368421053, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI225579078, Length=212, Percent_Identity=25, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI126723750, Length=193, Percent_Identity=27.4611398963731, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40807363, Length=217, Percent_Identity=25.8064516129032, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=32.7777777777778, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=33.3333333333333, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI2367365, Length=189, Percent_Identity=34.9206349206349, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787335, Length=235, Percent_Identity=28.936170212766, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790717, Length=190, Percent_Identity=26.8421052631579, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786812, Length=185, Percent_Identity=30.2702702702703, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1786701, Length=188, Percent_Identity=27.6595744680851, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17557668, Length=228, Percent_Identity=31.140350877193, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71994604, Length=203, Percent_Identity=31.0344827586207, Blast_Score=92, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=213, Percent_Identity=30.5164319248826, Blast_Score=91, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17559552, Length=218, Percent_Identity=30.2752293577982, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI212646214, Length=199, Percent_Identity=31.1557788944724, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17560176, Length=190, Percent_Identity=32.1052631578947, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI25152911, Length=196, Percent_Identity=31.1224489795918, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI115534694, Length=223, Percent_Identity=29.5964125560538, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=203, Percent_Identity=27.5862068965517, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=193, Percent_Identity=29.5336787564767, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=206, Percent_Identity=26.2135922330097, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=190, Percent_Identity=27.8947368421053, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=227, Percent_Identity=30.3964757709251, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=197, Percent_Identity=29.4416243654822, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=228, Percent_Identity=23.6842105263158, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=30.1980198019802, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=217, Percent_Identity=27.6497695852535, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=197, Percent_Identity=29.4416243654822, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193203115, Length=217, Percent_Identity=27.6497695852535, Blast_Score=64, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=245, Percent_Identity=27.7551020408163, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17532725, Length=188, Percent_Identity=25, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=192, Percent_Identity=33.8541666666667, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6319635, Length=187, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=188, Percent_Identity=28.1914893617021, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6322067, Length=192, Percent_Identity=26.5625, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI28571526, Length=208, Percent_Identity=35.5769230769231, Blast_Score=113, Evalue=1e-25,
Organism=Drosophila melanogaster, GI23397609, Length=190, Percent_Identity=37.3684210526316, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=30.8900523560209, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=30.8900523560209, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21357041, Length=192, Percent_Identity=33.8541666666667, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI24644339, Length=208, Percent_Identity=32.2115384615385, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28574402, Length=191, Percent_Identity=29.8429319371728, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24584752, Length=184, Percent_Identity=32.6086956521739, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24584744, Length=191, Percent_Identity=29.8429319371728, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=31.413612565445, Blast_Score=96, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281364892, Length=249, Percent_Identity=27.3092369477912, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24643142, Length=224, Percent_Identity=29.9107142857143, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21356301, Length=191, Percent_Identity=28.7958115183246, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI21358495, Length=191, Percent_Identity=30.8900523560209, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24644337, Length=206, Percent_Identity=32.0388349514563, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27981; Mature: 27850

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTTPSTVLITGASSGIGAVYAERFARRGHNLVTVARDKARLDALAARLREENGVAVEVIQ
CCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEEE
ADLTRSADLTALETRLREDTNIDVLINNAGIAQSGGFVQQNAESIDKLVALNIVALTRLA
HHHCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAVAPRFAQSGSGSIVNLGSVVGLAPEFGMSVYGATKAYVLFLSQGMNVELAPKGVYVQA
HHHHHHHHCCCCCCEEECCHHHHCCHHHCCHHHCCHHEEEEEEECCCCEEECCCCEEEEE
VLPAATRTEIWERAGIDLNTIAEVMDVDELVDAALVGYDRREQVTIPPLHVAGRWDSLDE
ECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEECCCCCCHHH
ARQGLLSDIRQAQAAERYRPQA
HHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTPSTVLITGASSGIGAVYAERFARRGHNLVTVARDKARLDALAARLREENGVAVEVIQ
CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCCEEEEEE
ADLTRSADLTALETRLREDTNIDVLINNAGIAQSGGFVQQNAESIDKLVALNIVALTRLA
HHHCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAVAPRFAQSGSGSIVNLGSVVGLAPEFGMSVYGATKAYVLFLSQGMNVELAPKGVYVQA
HHHHHHHHCCCCCCEEECCHHHHCCHHHCCHHHCCHHEEEEEEECCCCEEECCCCEEEEE
VLPAATRTEIWERAGIDLNTIAEVMDVDELVDAALVGYDRREQVTIPPLHVAGRWDSLDE
ECCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCEEECCCCCCHHH
ARQGLLSDIRQAQAAERYRPQA
HHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA