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The map label for this gene is ydcJ [H]

Identifier: 66046745

GI number: 66046745

Start: 4192314

End: 4193705

Strand: Direct

Name: ydcJ [H]

Synonym: Psyr_3516

Alternate gene names: 66046745

Gene position: 4192314-4193705 (Clockwise)

Preceding gene: 66046744

Following gene: 66046747

Centisome position: 68.8

GC content: 62.93

Gene sequence:

>1392_bases
ATGAGCACAGCACGCTTTGCCGACCCGGACCAGATCCGCGCGGGCTTTTCTCGCGCCATGTCGCAGATGTACAAGCACGA
AGTGCCGCTGTACGGCACGCTGATGGCGCTGGTGAGTGAAGTCAACGAACAGGTCATGAGCCATGACAGCAGTGTGCTGG
ACAGCCTGCGCCAGACCGGTGAAATCCAGCGCCTGGACATGGAACGGCACGGTGCGATCCGCGTCGGCACGGCACAGGAA
CTGGCCACCCTCGCCCGCCTGTTCGCGGTCATGGGCATGCAGCCGGTGGGTTACTACGACCTGAGCGCGGCCGGCGTGCC
GGTTCACTCCACCGCCTTTCGCGCCGTGCATGAGCAGGCGCTGCAGGTCAGTCCGTTTCGGGTGTTCACCTCGTTGCTGC
GTCTGGAACTGATCGAAAGCGACAGCCTGCGTGAGTTCGCCAGTCAGGTGCTGGGCAAACGCAGTATCTTCACGCCCGGC
GCCCTGGCGTTGATCGAGAAGCATGAAGCAGACGGCGGCTTGAGCGAAGCCGATGCGGCCGAGTTCATTCAGCAGGCGCT
GGAAACCTTTCGCTGGCACAACACGGCGACCGTTTCGCTGGACGACTATCAGAAGCTGAACACGCAGCATCGTCTGATCG
CTGATGTGGTGGCGTTTCGTGGTCCGCACATCAACCACCTGACGCCTCGCACGCTGGACATCGATGCGGTTCAGGCCGGC
ATGCCCGGCAAGGGCATCACCCCCAAAGCGGTGGTTGAAGGGCCGCCACGTCGCCAGTGCCCGATTCTGCTGCGCCAGAC
CAGCTTCAAGGCGCTGGAAGAACCGATTGCCTTCATCGGCCAAGGTGGCAGTCAGTCGGGCAGCCACTCGGCACGCTTCG
GCGAGATCGAACAGCGTGGCGCCGCACTGACGCCCAAAGGCCGCGAGCTGTATGACCGGCTGTTGAGCGAAGCCCGCGAC
GCGCTGGGCGAGTTCCCCAATGAGGCCAATGCCGTGCGCTATGCCGGGCTGCTGGAAGAGACGTTCAAGGCGTTCCCGGA
CAGCCACGCTGAAATGCGCAGGCAGGGTCTGGCCTACTTCCGCTATTTCCCGACCGAATCAGGCATTGCCGCGCGCGCAT
CAGGCAGTCTGGAGCAGCTTGTCGAAGCCGGTCATGTGCGCTTCGAGCCACTGGTGTACGAAGACTTTTTGCCGGTCAGC
GCGGCGGGTATCTTCCAGTCCAATCTGGGCGATAACGCACAGGCGCATTACGCGACGAATTCGAATCAGCAGGATTTCGA
GCGGGCGCTGGGACGCGGGACGCTTAACGAACTGGACCTGTATGCCGATACCCAGCGTCGCTCCCTGGAGGAATGCGCCA
AGGCGCTGGAGCTGAGCAGTCCCGCCTACTAA

Upstream 100 bases:

>100_bases
TCCCGCTGACCATCGAACCCGACGTGCTGCACGAAGGGCTGGATATTTTCGAGCGCTGCCTGGCAGCGCTGGCTTGAACC
CGTACGGAGAAAACACCCTG

Downstream 100 bases:

>100_bases
TTAGTGAGAGCGAGCTTGCTCGCGAAGACGATGTTTCAGGCGATGCATTTTGGCGCCCATACCGACTTTTTCGCGAACAA
GTTCGCTCCTACGGCCTTCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MSTARFADPDQIRAGFSRAMSQMYKHEVPLYGTLMALVSEVNEQVMSHDSSVLDSLRQTGEIQRLDMERHGAIRVGTAQE
LATLARLFAVMGMQPVGYYDLSAAGVPVHSTAFRAVHEQALQVSPFRVFTSLLRLELIESDSLREFASQVLGKRSIFTPG
ALALIEKHEADGGLSEADAAEFIQQALETFRWHNTATVSLDDYQKLNTQHRLIADVVAFRGPHINHLTPRTLDIDAVQAG
MPGKGITPKAVVEGPPRRQCPILLRQTSFKALEEPIAFIGQGGSQSGSHSARFGEIEQRGAALTPKGRELYDRLLSEARD
ALGEFPNEANAVRYAGLLEETFKAFPDSHAEMRRQGLAYFRYFPTESGIAARASGSLEQLVEAGHVRFEPLVYEDFLPVS
AAGIFQSNLGDNAQAHYATNSNQQDFERALGRGTLNELDLYADTQRRSLEECAKALELSSPAY

Sequences:

>Translated_463_residues
MSTARFADPDQIRAGFSRAMSQMYKHEVPLYGTLMALVSEVNEQVMSHDSSVLDSLRQTGEIQRLDMERHGAIRVGTAQE
LATLARLFAVMGMQPVGYYDLSAAGVPVHSTAFRAVHEQALQVSPFRVFTSLLRLELIESDSLREFASQVLGKRSIFTPG
ALALIEKHEADGGLSEADAAEFIQQALETFRWHNTATVSLDDYQKLNTQHRLIADVVAFRGPHINHLTPRTLDIDAVQAG
MPGKGITPKAVVEGPPRRQCPILLRQTSFKALEEPIAFIGQGGSQSGSHSARFGEIEQRGAALTPKGRELYDRLLSEARD
ALGEFPNEANAVRYAGLLEETFKAFPDSHAEMRRQGLAYFRYFPTESGIAARASGSLEQLVEAGHVRFEPLVYEDFLPVS
AAGIFQSNLGDNAQAHYATNSNQQDFERALGRGTLNELDLYADTQRRSLEECAKALELSSPAY
>Mature_462_residues
STARFADPDQIRAGFSRAMSQMYKHEVPLYGTLMALVSEVNEQVMSHDSSVLDSLRQTGEIQRLDMERHGAIRVGTAQEL
ATLARLFAVMGMQPVGYYDLSAAGVPVHSTAFRAVHEQALQVSPFRVFTSLLRLELIESDSLREFASQVLGKRSIFTPGA
LALIEKHEADGGLSEADAAEFIQQALETFRWHNTATVSLDDYQKLNTQHRLIADVVAFRGPHINHLTPRTLDIDAVQAGM
PGKGITPKAVVEGPPRRQCPILLRQTSFKALEEPIAFIGQGGSQSGSHSARFGEIEQRGAALTPKGRELYDRLLSEARDA
LGEFPNEANAVRYAGLLEETFKAFPDSHAEMRRQGLAYFRYFPTESGIAARASGSLEQLVEAGHVRFEPLVYEDFLPVSA
AGIFQSNLGDNAQAHYATNSNQQDFERALGRGTLNELDLYADTQRRSLEECAKALELSSPAY

Specific function: Unknown

COG id: COG5383

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv3292 [H]

Homologues:

Organism=Escherichia coli, GI1787692, Length=447, Percent_Identity=56.3758389261745, Blast_Score=496, Evalue=1e-141,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009770 [H]

Pfam domain/function: PF07063 DUF1338 [H]

EC number: NA

Molecular weight: Translated: 51013; Mature: 50882

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTARFADPDQIRAGFSRAMSQMYKHEVPLYGTLMALVSEVNEQVMSHDSSVLDSLRQTG
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
EIQRLDMERHGAIRVGTAQELATLARLFAVMGMQPVGYYDLSAAGVPVHSTAFRAVHEQA
CCEECCHHHCCCEEECCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHH
LQVSPFRVFTSLLRLELIESDSLREFASQVLGKRSIFTPGALALIEKHEADGGLSEADAA
HCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHH
EFIQQALETFRWHNTATVSLDDYQKLNTQHRLIADVVAFRGPHINHLTPRTLDIDAVQAG
HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHCC
MPGKGITPKAVVEGPPRRQCPILLRQTSFKALEEPIAFIGQGGSQSGSHSARFGEIEQRG
CCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCC
AALTPKGRELYDRLLSEARDALGEFPNEANAVRYAGLLEETFKAFPDSHAEMRRQGLAYF
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCHHH
RYFPTESGIAARASGSLEQLVEAGHVRFEPLVYEDFLPVSAAGIFQSNLGDNAQAHYATN
EECCCCCCCCCCCCCCHHHHHHHCCCEECCCHHHCCCCHHHHHHHHHCCCCCCCEEECCC
SNQQDFERALGRGTLNELDLYADTQRRSLEECAKALELSSPAY
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STARFADPDQIRAGFSRAMSQMYKHEVPLYGTLMALVSEVNEQVMSHDSSVLDSLRQTG
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC
EIQRLDMERHGAIRVGTAQELATLARLFAVMGMQPVGYYDLSAAGVPVHSTAFRAVHEQA
CCEECCHHHCCCEEECCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHH
LQVSPFRVFTSLLRLELIESDSLREFASQVLGKRSIFTPGALALIEKHEADGGLSEADAA
HCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCHHHHH
EFIQQALETFRWHNTATVSLDDYQKLNTQHRLIADVVAFRGPHINHLTPRTLDIDAVQAG
HHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHCC
MPGKGITPKAVVEGPPRRQCPILLRQTSFKALEEPIAFIGQGGSQSGSHSARFGEIEQRG
CCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCC
AALTPKGRELYDRLLSEARDALGEFPNEANAVRYAGLLEETFKAFPDSHAEMRRQGLAYF
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCHHH
RYFPTESGIAARASGSLEQLVEAGHVRFEPLVYEDFLPVSAAGIFQSNLGDNAQAHYATN
EECCCCCCCCCCCCCCHHHHHHHCCCEECCCHHHCCCCHHHHHHHHHCCCCCCCEEECCC
SNQQDFERALGRGTLNELDLYADTQRRSLEECAKALELSSPAY
CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]