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The map label for this gene is ycaD [C]

Identifier: 66046720

GI number: 66046720

Start: 4159382

End: 4160803

Strand: Reverse

Name: ycaD [C]

Synonym: Psyr_3491

Alternate gene names: 66046720

Gene position: 4160803-4159382 (Counterclockwise)

Preceding gene: 66046721

Following gene: 66046715

Centisome position: 68.28

GC content: 62.59

Gene sequence:

>1422_bases
ATGCGCCAAATCTGGAAGTCCTTTCGAGCGCTTTATTTTGCCTCGTTGATGATGTTGATCGGCTCGGGTCTGCTGAGCAC
TTATCTGGCCCTGCGCCTGGCGGCCGATCAGGTTGACAGCCTGTGGGTCGGTGCGTTGATGGCCGCCAACTATTTCGGTC
TGGTGCTGGGCGGCAAGATCGGTCACCGCCTGATCGGCCGTGTCGGGCATATTCGCGCCTACGCCACCTGTGCCGGCATT
GTCGGTGCGGCGGTGCTGGGGCATGGCCTGATCAGCTGGTTGCCCGCCTGGCTGGTGCTGAGGGTGATCGTCGGTCTGGG
CATGATGTGCCAATACATGGTCATCGAGAGCTGGCTGAACGAGCAGGCGGCCGCCAAACAGCGCGGCATGGTCTTCAGCG
GCTACATGATTGCATCCTACCTGGGGCTGGTACTGGGTCAGCTGGTGCTGGTGGTTCACCCGCAACTGGGGCCTGAGCTG
CTGATGCTGGTAGCGCTGTGTTTCGCACTGTGCCTGGTGCCCGTCGCCATGACCCGGGCGATTCACCCGGCGCCTCTGCA
TCCGGCACCACTGGAGCCGCGCTTCTTCATGAAACGTGTGCCGCAGTCGTTGACGGCGGTACTGGGCGCCGGTCTGATAA
TCGGTTCGTTCTACGGCCTGGCGCCGGTCTACGCCGCCGAGCAGGGACTGTCCACCGAGCAGGTCGGTCTGTTCATGGGC
TGCTGCATTCTGGCCGGGTTTCTGGTGCAGTGGCCGTTGGGCCTGCTGTCCGACCGCTATGACCGTTCCGTACTGATGCG
TATCTTTGCCGCCGCCCTGGTGGTGGCGTCGTTACCGCTGGCGGTGTTTCCCAGCGTGCCGGTCGAGGTGCTGTTCGGTG
TCGGGTTTCTGGCTTCGCTGATGCAGTTCTGCCTCTATCCACTGGCAGTGGCCTTCGCCAATGACCACGTCGAGGCCGAG
CGCCGGGTGTCGCTGACGGCCATGTTGCTCATGACCTATGGCATTGGCGCCAGTATCGGTCCGTTGGCCGCAGGTGTGGT
GATGAAGCTGTTTGGCGGGCACATGCTCTATGCGTTCGTCTGTGGCGCGGGTGTGATTCTGGTGCTGCTGATCAGGCCCA
AGGCGGTCACTCACCTGCACCAGGTCGAAAACGCACCGCTGCACCACGTTGCGATGCCGGACAGTATGTCCAGTTCGCCA
CTGGTGGTTGCACTTGACCCGCGTGTCGATGAGCAGGTGGTTCAGGAGCAGATGCAGGCAACCGTTGAGCCTGAGCCAGA
GGCGGATCCCGAGGTGGTGTCTGAAGCAGAGGCCGAGGCAGAAAGCGAGGTTCTGGCGCAGAGCGAGCCGGCTGCAGGTG
CGGAAACAACCGAAGCCGATGAGCATGAACGCGAGCGTGAAAGCGAGACCTGGAAGGCCTGA

Upstream 100 bases:

>100_bases
CGAGATAACCCCCTGGGAACGGCGCGTGCTGGCTGCTCAGGTTTAAGAATCGCAGTGTCGGGCTCGCCCAGTCGGGCGAC
TCCCTATTTTTGGAAAGTTG

Downstream 100 bases:

>100_bases
GGGGTAGGGCAGTGCACGATTGCGGCAGCAATGCCGCAATCGCCGGGGGATTCAGGTGAGCGTCAGAAGTCGTCGTCTTT
GTCGAAGCGCCGTGCTTCGC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MRQIWKSFRALYFASLMMLIGSGLLSTYLALRLAADQVDSLWVGALMAANYFGLVLGGKIGHRLIGRVGHIRAYATCAGI
VGAAVLGHGLISWLPAWLVLRVIVGLGMMCQYMVIESWLNEQAAAKQRGMVFSGYMIASYLGLVLGQLVLVVHPQLGPEL
LMLVALCFALCLVPVAMTRAIHPAPLHPAPLEPRFFMKRVPQSLTAVLGAGLIIGSFYGLAPVYAAEQGLSTEQVGLFMG
CCILAGFLVQWPLGLLSDRYDRSVLMRIFAAALVVASLPLAVFPSVPVEVLFGVGFLASLMQFCLYPLAVAFANDHVEAE
RRVSLTAMLLMTYGIGASIGPLAAGVVMKLFGGHMLYAFVCGAGVILVLLIRPKAVTHLHQVENAPLHHVAMPDSMSSSP
LVVALDPRVDEQVVQEQMQATVEPEPEADPEVVSEAEAEAESEVLAQSEPAAGAETTEADEHERERESETWKA

Sequences:

>Translated_473_residues
MRQIWKSFRALYFASLMMLIGSGLLSTYLALRLAADQVDSLWVGALMAANYFGLVLGGKIGHRLIGRVGHIRAYATCAGI
VGAAVLGHGLISWLPAWLVLRVIVGLGMMCQYMVIESWLNEQAAAKQRGMVFSGYMIASYLGLVLGQLVLVVHPQLGPEL
LMLVALCFALCLVPVAMTRAIHPAPLHPAPLEPRFFMKRVPQSLTAVLGAGLIIGSFYGLAPVYAAEQGLSTEQVGLFMG
CCILAGFLVQWPLGLLSDRYDRSVLMRIFAAALVVASLPLAVFPSVPVEVLFGVGFLASLMQFCLYPLAVAFANDHVEAE
RRVSLTAMLLMTYGIGASIGPLAAGVVMKLFGGHMLYAFVCGAGVILVLLIRPKAVTHLHQVENAPLHHVAMPDSMSSSP
LVVALDPRVDEQVVQEQMQATVEPEPEADPEVVSEAEAEAESEVLAQSEPAAGAETTEADEHERERESETWKA
>Mature_473_residues
MRQIWKSFRALYFASLMMLIGSGLLSTYLALRLAADQVDSLWVGALMAANYFGLVLGGKIGHRLIGRVGHIRAYATCAGI
VGAAVLGHGLISWLPAWLVLRVIVGLGMMCQYMVIESWLNEQAAAKQRGMVFSGYMIASYLGLVLGQLVLVVHPQLGPEL
LMLVALCFALCLVPVAMTRAIHPAPLHPAPLEPRFFMKRVPQSLTAVLGAGLIIGSFYGLAPVYAAEQGLSTEQVGLFMG
CCILAGFLVQWPLGLLSDRYDRSVLMRIFAAALVVASLPLAVFPSVPVEVLFGVGFLASLMQFCLYPLAVAFANDHVEAE
RRVSLTAMLLMTYGIGASIGPLAAGVVMKLFGGHMLYAFVCGAGVILVLLIRPKAVTHLHQVENAPLHHVAMPDSMSSSP
LVVALDPRVDEQVVQEQMQATVEPEPEADPEVVSEAEAEAESEVLAQSEPAAGAETTEADEHERERESETWKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=371, Percent_Identity=27.2237196765499, Blast_Score=142, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 50874; Mature: 50874

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC
>Mature Secondary Structure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CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA