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The map label for this gene is fliN [H]

Identifier: 66046675

GI number: 66046675

Start: 4109479

End: 4109937

Strand: Reverse

Name: fliN [H]

Synonym: Psyr_3446

Alternate gene names: 66046675

Gene position: 4109937-4109479 (Counterclockwise)

Preceding gene: 66046676

Following gene: 66046674

Centisome position: 67.45

GC content: 57.08

Gene sequence:

>459_bases
ATGGCTGATGAAAACGATATGACGTCTGCTGAAGACCAGGCATTGGCCGATGAATGGGCTGCTGCCTTGGGCGAAGCTGG
CGACAGTCAGGCTGATATTGATGCGTTGCTGGCTGCGGACGCCGGGAATTCGGGTAGCCGGATGGCCATGGAAGAGTTTG
GCAGCGTGCCGAAAAGCACTGGTCCGGTTTCTCTGGATGGTCCCAATCTGGATGTGATTCTCGACATTCCGGTATCGATC
TCCATGGAAGTGGGCAGCACCGACATTAACATTCGCAACCTGTTGCAGCTCAACCAGGGCTCGGTGATCGAGCTGGATCG
TCTGGCGGGCGAACCGCTGGATGTGCTGGTCAACGGCACACTGATCGCGCATGGCGAAGTGGTGGTGGTCAACGAAAAGT
TCGGCATCCGTCTGACCGACGTGATCAGCCCGAGCGAACGCATCAAGAAGCTGCGCTAA

Upstream 100 bases:

>100_bases
ATGGCCCTGCAAGTAATCGAACCCATAGCGCGACGCTGACCTTTCTGGTCTGCGTCGGAAATTGTTGCGTAACTGAAATA
CTGCGTGCAGAGGACAACCG

Downstream 100 bases:

>100_bases
GTGAGGCGCTGGCTGAGTGTTCTGCTGACCCTGCCATCGCTGGCCTGGGCCGCCGAACCCGCCGCTCAGGCGGCGCCTGC
GCAGGTGGCCAACACGGTCT

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMAMEEFGSVPKSTGPVSLDGPNLDVILDIPVSI
SMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR

Sequences:

>Translated_152_residues
MADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMAMEEFGSVPKSTGPVSLDGPNLDVILDIPVSI
SMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
>Mature_151_residues
ADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMAMEEFGSVPKSTGPVSLDGPNLDVILDIPVSIS
MEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=151, Percent_Identity=43.046357615894, Blast_Score=121, Evalue=2e-29,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15999; Mature: 15868

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMAMEEFGSVPKST
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEHHHHHCCCCCCC
GPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGT
CCEEECCCCEEEEEECCCEEEEECCCCCCCHHHHEECCCCCEEEEHHHCCCCEEEEEECE
LIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
EEECCCEEEEECCCCEEEEECCCCHHHHHCCC
>Mature Secondary Structure 
ADENDMTSAEDQALADEWAAALGEAGDSQADIDALLAADAGNSGSRMAMEEFGSVPKST
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEHHHHHCCCCCCC
GPVSLDGPNLDVILDIPVSISMEVGSTDINIRNLLQLNQGSVIELDRLAGEPLDVLVNGT
CCEEECCCCEEEEEECCCEEEEECCCCCCCHHHHEECCCCCEEEEHHHCCCCEEEEEECE
LIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
EEECCCEEEEECCCCEEEEECCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]