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The map label for this gene is fliR [H]

Identifier: 66046671

GI number: 66046671

Start: 4107199

End: 4107984

Strand: Reverse

Name: fliR [H]

Synonym: Psyr_3442

Alternate gene names: 66046671

Gene position: 4107984-4107199 (Counterclockwise)

Preceding gene: 66046672

Following gene: 66046670

Centisome position: 67.41

GC content: 59.54

Gene sequence:

>786_bases
ATGCAGCCGATGCTTGCGCTGACCGATACCCAGATCAGTACCTGGGTAGCCAGCTTCATGCTGCCGCTGTTTCGCATCAT
CGCGTTGCTGATGACCATGCCGATCATCGGCACCACGCTGGTCCCGCGTCGCGTGCGCATGTACCTCGCCGTGGCGATCA
CCGTGGTGGTCGCGCCTGCGCTTCCAGCCATGCCGCCCGTGCAGGCGCTCGACCTGAGCGCGCTGTTGCTGATCGGTGAA
CAGATCATCATCGGCGCCGGGATGGGCCTGTCGTTGCAGTTGTTCTTCCATATTTTTGTCATCGCGGGACAGATCATCTC
GACGCAGATGGGGATGGGCTTTGCGTCGATGGTCGACCCTACCAACGGTGTTTCCTCCGCCACCATTGGTCAGTTCTTCA
CGATGCTGGTCACCCTGTTGTTCCTGGCCATGAATGGCCATCTGGTGGTGCTGGAGGTTCTCGTCGAGAGCTTTACCACG
ATGCCGGTCGGCAGTGGTTTGCTGGTCAATAACTTCTGGGAGCTGGCCAACGGGCTGGGCTGGGTACTGGCTTCGGGTCT
GCGACTGGTATTGCCTGCGATCACCGCGCTGCTGATCATCAACATCGCCTTCGGGGTCATGACCCGCGCCGCGCCGCAAC
TCAACATCTTTTCCATCGGCTTCCCGCTTACGCTGGTGTTGGGCATGGTCATTCTGTGGATGACGATGGGTGACATGCTC
AATCAGTATCAACCGATCGCAACGCAGGCCTTGCAGGCGTTGCGCGATATGGTGAGGGCTCGTTGA

Upstream 100 bases:

>100_bases
CGTCACCCTTATCGTCATCGGCCCGTGGCTGTTGAAAATATTCATGGAATACATGCTGTCGTTGTACACCAGTATTCCGA
CCCTGATCGGCTAGCACCGC

Downstream 100 bases:

>100_bases
ATGGCAGAAAACGAGAATGGCCAGGACAAGACAGAAGACCCCACGGAAAAAAAGGTCAAGGACTCACGGGCTGACGGCCA
GATCGCGCGCTCCAAGGAGC

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 261; Mature: 261

Protein sequence:

>261_residues
MQPMLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALLLIGE
QIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTT
MPVGSGLLVNNFWELANGLGWVLASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDML
NQYQPIATQALQALRDMVRAR

Sequences:

>Translated_261_residues
MQPMLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALLLIGE
QIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTT
MPVGSGLLVNNFWELANGLGWVLASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDML
NQYQPIATQALQALRDMVRAR
>Mature_261_residues
MQPMLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPALPAMPPVQALDLSALLLIGE
QIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDPTNGVSSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTT
MPVGSGLLVNNFWELANGLGWVLASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDML
NQYQPIATQALQALRDMVRAR

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=227, Percent_Identity=42.2907488986784, Blast_Score=139, Evalue=2e-34,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28174; Mature: 28174

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.7 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
7.7 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPMLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPAMPPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDP
CCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
TNGVSSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNNFWELANGLG
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
WVLASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
NQYQPIATQALQALRDMVRAR
HHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQPMLALTDTQISTWVASFMLPLFRIIALLMTMPIIGTTLVPRRVRMYLAVAITVVVAPA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPAMPPVQALDLSALLLIGEQIIIGAGMGLSLQLFFHIFVIAGQIISTQMGMGFASMVDP
CCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC
TNGVSSATIGQFFTMLVTLLFLAMNGHLVVLEVLVESFTTMPVGSGLLVNNFWELANGLG
CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
WVLASGLRLVLPAITALLIINIAFGVMTRAAPQLNIFSIGFPLTLVLGMVILWMTMGDML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
NQYQPIATQALQALRDMVRAR
HHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]