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The map label for this gene is yjgF [C]

Identifier: 66046628

GI number: 66046628

Start: 4056388

End: 4056786

Strand: Direct

Name: yjgF [C]

Synonym: Psyr_3399

Alternate gene names: 66046628

Gene position: 4056388-4056786 (Clockwise)

Preceding gene: 66046627

Following gene: 66046629

Centisome position: 66.57

GC content: 63.66

Gene sequence:

>399_bases
ATGGCTGGTGAGATGAAACCGATCAGTACGCCCGGGGCTGCAGCACCCGGCGGGCATTATTCGCAGGCGATGCTGCATCA
AGGCACGCTGCATGTTTCCGGACAACTGCCGGTGCGCGCCGATGGCAGTCACAGCGTCGGCGAGCCGTTCGAGGTCCAGG
CCGCCGTGGCGCTGGACAATCTGCTGGCCATCCTTGGCGCAGCGGGATGCAGCACGGATGACCTGCTTAAAGTGACCATT
TACATCGCAGGCGTCCAGCACTGGCCTGCCTTCGACCGCCTCTACGCGGGCTATCTGGGCGAGCATCGCCCTGCGCGCGC
GGTGGTGCCGGTCCCGGAATTGCACCACGGTTACCTGATCGAGATCGAAGCCCTGGCGCGTTGTAGCCAATCAACATGA

Upstream 100 bases:

>100_bases
CTGCGCATTCTGCCCAATCACGCCTGTGCCACCGGCGCGCAATTCCCCGACTACCACGCCTGCGACAGCGAAGGCGCAAT
CCATACCTGGAGTCGTCTGC

Downstream 100 bases:

>100_bases
CCGGGAGCCCCTCATGACCCCACAAAAAAGCGATGTCCTGATTATCGGCGGCGGCTTCATGGGCGCATCCTCCGCGTTTT
TTCTGCGCCAGCACGGCCGT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 131

Protein sequence:

>132_residues
MAGEMKPISTPGAAAPGGHYSQAMLHQGTLHVSGQLPVRADGSHSVGEPFEVQAAVALDNLLAILGAAGCSTDDLLKVTI
YIAGVQHWPAFDRLYAGYLGEHRPARAVVPVPELHHGYLIEIEALARCSQST

Sequences:

>Translated_132_residues
MAGEMKPISTPGAAAPGGHYSQAMLHQGTLHVSGQLPVRADGSHSVGEPFEVQAAVALDNLLAILGAAGCSTDDLLKVTI
YIAGVQHWPAFDRLYAGYLGEHRPARAVVPVPELHHGYLIEIEALARCSQST
>Mature_131_residues
AGEMKPISTPGAAAPGGHYSQAMLHQGTLHVSGQLPVRADGSHSVGEPFEVQAAVALDNLLAILGAAGCSTDDLLKVTIY
IAGVQHWPAFDRLYAGYLGEHRPARAVVPVPELHHGYLIEIEALARCSQST

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=123, Percent_Identity=37.3983739837398, Blast_Score=72, Evalue=9e-14,
Organism=Escherichia coli, GI87082396, Length=127, Percent_Identity=35.4330708661417, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI87082213, Length=127, Percent_Identity=33.8582677165354, Blast_Score=62, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322138, Length=122, Percent_Identity=31.9672131147541, Blast_Score=73, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6320899, Length=126, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-13,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=36.8852459016393, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 13891; Mature: 13760

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGEMKPISTPGAAAPGGHYSQAMLHQGTLHVSGQLPVRADGSHSVGEPFEVQAAVALDN
CCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCEEECCCCCCCCCEEEHHHHHHHH
LLAILGAAGCSTDDLLKVTIYIAGVQHWPAFDRLYAGYLGEHRPARAVVPVPELHHGYLI
HHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEE
EIEALARCSQST
EEHHHHHCCCCC
>Mature Secondary Structure 
AGEMKPISTPGAAAPGGHYSQAMLHQGTLHVSGQLPVRADGSHSVGEPFEVQAAVALDN
CCCCCCCCCCCCCCCCCCHHHHHHHCCEEEECCCCCEEECCCCCCCCCEEEHHHHHHHH
LLAILGAAGCSTDDLLKVTIYIAGVQHWPAFDRLYAGYLGEHRPARAVVPVPELHHGYLI
HHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCEEE
EIEALARCSQST
EEHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]