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The map label for this gene is 66046627

Identifier: 66046627

GI number: 66046627

Start: 4055262

End: 4056398

Strand: Direct

Name: 66046627

Synonym: Psyr_3398

Alternate gene names: NA

Gene position: 4055262-4056398 (Clockwise)

Preceding gene: 66046624

Following gene: 66046628

Centisome position: 66.55

GC content: 63.32

Gene sequence:

>1137_bases
ATGTCAGCCTCCCTGTCTTCTCTCGATACGCCTGTCGCGCTGCTCGACGTGTCGCGCATGCAGCACAATATCCAGCGCAT
GCAACAACGCATGAATGAACTGGGCGTGCGCTTGCGCCCACACGTCAAGACCAGCAAATGCCTGCCGGTCATTCAGGCGC
AGATTGCAGCGGGCGCCAGCGGCGTCACGGTGTCGACATTAAAGGAGGCCGAGCACTGCTTTGCCGAAGGCATCGACGAC
GTGTTCTATGCCGTCGCCATTGCACCCGGCAAGCTGGAGCAGGCACTCAGACTGCGGCGCAAGGGCTGCCGCCTGAGCAT
CCTGACCGATAGCGTAGCGGCGGCCCGGGCGATTGCGGTTTTCGGCCAGGCGCATGACGAACGTTTCGACGTGTGGATTG
AAATCGATTGCGACGGTCATCGCTCCGGGCTGACCGTCGAAGACCCCTCGCTGGTCGAGGTCGCGAGCACGCTGGTCAAC
GGCGGCATGCAACTGCGTGGGGTAATGACCCATGCCGGGTCCAGTTATGACCTCGACACCCCCGCAGCCCTGCAAGCGCT
CGCCGAACAGGAACGCAGGCTGTGCGTCAGCGCCGCCGAGCGGATTCGCCAGGCAGGGCTGCCCTGTGCGGACGTCAGCA
TCGGTTCGACCCCGACGGCACTGTCGGCGCAGAGCCTGCACGGCGTGACCGAAGTTCGCGCCGGGGTGTATGTGTTCTTC
GATCTGGTGATGCACAACATTGGCGTATGCCGGGCAGATGAGCTGGCCCTGAGCGTGTTGACCACGGTCATCGGCCATCA
GCAGGACAAGGGCTGGATCATCGTTGACGCAGGCTGGATGGCCATGAGTCGCGACCGTGGCACTCAGCGCCAGCGTGAGG
ATTTCGGCTATGGCCAGGTGTGCAACGAAACTGGCGAGTGGATCGACGGTGCACGGGTCACCGGTGCCAATCAGGAGCAC
GGCATCATCACGCTTGCTGCGGGCAGCGAGACCGACATCAGCGAGCGTTTTCCCATCGGTAGCCGGCTGCGCATTCTGCC
CAATCACGCCTGTGCCACCGGCGCGCAATTCCCCGACTACCACGCCTGCGACAGCGAAGGCGCAATCCATACCTGGAGTC
GTCTGCATGGCTGGTGA

Upstream 100 bases:

>100_bases
TCATTCACTTTAGCTTAAGGATTGATGATCACGCATTGAACCACAGCTTCATCATCGCTGCGTAGAGTGGCTGCCGTACC
TAGTCACACGAGCGCTTTCC

Downstream 100 bases:

>100_bases
GATGAAACCGATCAGTACGCCCGGGGCTGCAGCACCCGGCGGGCATTATTCGCAGGCGATGCTGCATCAAGGCACGCTGC
ATGTTTCCGGACAACTGCCG

Product: alanine racemase, N-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 378; Mature: 377

Protein sequence:

>378_residues
MSASLSSLDTPVALLDVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVIQAQIAAGASGVTVSTLKEAEHCFAEGIDD
VFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAVFGQAHDERFDVWIEIDCDGHRSGLTVEDPSLVEVASTLVN
GGMQLRGVMTHAGSSYDLDTPAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVFF
DLVMHNIGVCRADELALSVLTTVIGHQQDKGWIIVDAGWMAMSRDRGTQRQREDFGYGQVCNETGEWIDGARVTGANQEH
GIITLAAGSETDISERFPIGSRLRILPNHACATGAQFPDYHACDSEGAIHTWSRLHGW

Sequences:

>Translated_378_residues
MSASLSSLDTPVALLDVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVIQAQIAAGASGVTVSTLKEAEHCFAEGIDD
VFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAVFGQAHDERFDVWIEIDCDGHRSGLTVEDPSLVEVASTLVN
GGMQLRGVMTHAGSSYDLDTPAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVFF
DLVMHNIGVCRADELALSVLTTVIGHQQDKGWIIVDAGWMAMSRDRGTQRQREDFGYGQVCNETGEWIDGARVTGANQEH
GIITLAAGSETDISERFPIGSRLRILPNHACATGAQFPDYHACDSEGAIHTWSRLHGW
>Mature_377_residues
SASLSSLDTPVALLDVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVIQAQIAAGASGVTVSTLKEAEHCFAEGIDDV
FYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAVFGQAHDERFDVWIEIDCDGHRSGLTVEDPSLVEVASTLVNG
GMQLRGVMTHAGSSYDLDTPAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVFFD
LVMHNIGVCRADELALSVLTTVIGHQQDKGWIIVDAGWMAMSRDRGTQRQREDFGYGQVCNETGEWIDGARVTGANQEHG
IITLAAGSETDISERFPIGSRLRILPNHACATGAQFPDYHACDSEGAIHTWSRLHGW

Specific function: Catalyzes the reversible cleavage of D-theronine or D- allothreonine into glycine and acetaldehyde. Can also cleave D- beta-phenylserine, D-beta-hydroxy-alpha-aminovaleric acid, D-beta- 3,4-dihydroxyphenylserine and D-beta-3,4- methylenedioxyphenylserine

COG id: COG3616

COG function: function code E; Predicted amino acid aldolase or racemase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DSD1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: =4.1.2.42 [H]

Molecular weight: Translated: 40908; Mature: 40777

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASLSSLDTPVALLDVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVIQAQIAAGAS
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHCCCC
GVTVSTLKEAEHCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAV
CCCHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH
FGQAHDERFDVWIEIDCDGHRSGLTVEDPSLVEVASTLVNGGMQLRGVMTHAGSSYDLDT
HHCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCC
PAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVFF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHH
DLVMHNIGVCRADELALSVLTTVIGHQQDKGWIIVDAGWMAMSRDRGTQRQREDFGYGQV
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCHHHHHHCCCCHH
CNETGEWIDGARVTGANQEHGIITLAAGSETDISERFPIGSRLRILPNHACATGAQFPDY
HHCCCCCCCCCEECCCCCCCCEEEEECCCCCCCHHHCCCCCCEEECCCCHHCCCCCCCCC
HACDSEGAIHTWSRLHGW
CCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
SASLSSLDTPVALLDVSRMQHNIQRMQQRMNELGVRLRPHVKTSKCLPVIQAQIAAGAS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHCCCC
GVTVSTLKEAEHCFAEGIDDVFYAVAIAPGKLEQALRLRRKGCRLSILTDSVAAARAIAV
CCCHHHHHHHHHHHHHCHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECHHHHHHHHHHH
FGQAHDERFDVWIEIDCDGHRSGLTVEDPSLVEVASTLVNGGMQLRGVMTHAGSSYDLDT
HHCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEHHCCCCCCCCC
PAALQALAEQERRLCVSAAERIRQAGLPCADVSIGSTPTALSAQSLHGVTEVRAGVYVFF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHH
DLVMHNIGVCRADELALSVLTTVIGHQQDKGWIIVDAGWMAMSRDRGTQRQREDFGYGQV
HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEECCCCCCHHHHHHCCCCHH
CNETGEWIDGARVTGANQEHGIITLAAGSETDISERFPIGSRLRILPNHACATGAQFPDY
HHCCCCCCCCCEECCCCCCCCEEEEECCCCCCCHHHCCCCCCEEECCCCHHCCCCCCCCC
HACDSEGAIHTWSRLHGW
CCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9642221 [H]