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The map label for this gene is ccmH [H]

Identifier: 66046615

GI number: 66046615

Start: 4045621

End: 4046091

Strand: Reverse

Name: ccmH [H]

Synonym: Psyr_3386

Alternate gene names: 66046615

Gene position: 4046091-4045621 (Counterclockwise)

Preceding gene: 66046616

Following gene: 66046614

Centisome position: 66.4

GC content: 59.66

Gene sequence:

>471_bases
ATGAAGCGCTGTCTGTTGATCGTCCTGCTCAGCGTGCTGTGCTCAGGCATTGCTCAAGCGGCCATCGACGCTTATGCCTT
TCGCGACGACGCCGAGCGCGCGCGTTACAGCGAACTGACCAGAGAACTGCGTTGCCCGAAATGCCAGAACCAGGACATCG
CCGACTCCAATGCGCCGATTGCCGCTGATTTGCGCAAGGAAATCTACCGCATGCTGGGCGAAGGGCAGAGCAACCAGCAG
ATCATCGATTTCATGGTCGATCGCTATGGTGATTTCGTTCGCTACAAGCCGAGCCTCAATGCGCGTACCTGGCTGCTGTG
GTTCGGGCCCGCCGCTCTGCTGATCGGCGGGCTGGCGGTGATCGGCTTTATCGTCAGCCGACGCCGCAAGGCGCAATCCG
CACAGCCCGATGAGCTTTCCGAAGATGAAAGGCAGCGTCTTGCCACCTTGCTGAATGAGCACCGCCCATGA

Upstream 100 bases:

>100_bases
AAGGCATCATTCGTTACAAACACGTCGGGGTCATCGACGACGCAGTTTGGCGCGAAAAGCTTGCCGCGCGCTATCAGCAA
CTGGTTGATGAGGCACAGCC

Downstream 100 bases:

>100_bases
TCGATTTCTGGATGGCAGCCGGGCTGTTGCTGCTGGTTGCGCTGAGCTTCTTGCTGATTCCGCTGCTGCGCGGCCATCGC
GCGCAACGGGAAGAAGACCG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MKRCLLIVLLSVLCSGIAQAAIDAYAFRDDAERARYSELTRELRCPKCQNQDIADSNAPIAADLRKEIYRMLGEGQSNQQ
IIDFMVDRYGDFVRYKPSLNARTWLLWFGPAALLIGGLAVIGFIVSRRRKAQSAQPDELSEDERQRLATLLNEHRP

Sequences:

>Translated_156_residues
MKRCLLIVLLSVLCSGIAQAAIDAYAFRDDAERARYSELTRELRCPKCQNQDIADSNAPIAADLRKEIYRMLGEGQSNQQ
IIDFMVDRYGDFVRYKPSLNARTWLLWFGPAALLIGGLAVIGFIVSRRRKAQSAQPDELSEDERQRLATLLNEHRP
>Mature_156_residues
MKRCLLIVLLSVLCSGIAQAAIDAYAFRDDAERARYSELTRELRCPKCQNQDIADSNAPIAADLRKEIYRMLGEGQSNQQ
IIDFMVDRYGDFVRYKPSLNARTWLLWFGPAALLIGGLAVIGFIVSRRRKAQSAQPDELSEDERQRLATLLNEHRP

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=137, Percent_Identity=46.7153284671533, Blast_Score=123, Evalue=6e-30,
Organism=Escherichia coli, GI1790512, Length=90, Percent_Identity=41.1111111111111, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 17729; Mature: 17729

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRCLLIVLLSVLCSGIAQAAIDAYAFRDDAERARYSELTRELRCPKCQNQDIADSNAPI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
AADLRKEIYRMLGEGQSNQQIIDFMVDRYGDFVRYKPSLNARTWLLWFGPAALLIGGLAV
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCCCEEEEEHHHHHHHHHHHHHH
IGFIVSRRRKAQSAQPDELSEDERQRLATLLNEHRP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRCLLIVLLSVLCSGIAQAAIDAYAFRDDAERARYSELTRELRCPKCQNQDIADSNAPI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
AADLRKEIYRMLGEGQSNQQIIDFMVDRYGDFVRYKPSLNARTWLLWFGPAALLIGGLAV
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCCCEEEEEHHHHHHHHHHHHHH
IGFIVSRRRKAQSAQPDELSEDERQRLATLLNEHRP
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA