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The map label for this gene is cycH [H]

Identifier: 66046614

GI number: 66046614

Start: 4044431

End: 4045624

Strand: Reverse

Name: cycH [H]

Synonym: Psyr_3385

Alternate gene names: 66046614

Gene position: 4045624-4044431 (Counterclockwise)

Preceding gene: 66046615

Following gene: 66046613

Centisome position: 66.39

GC content: 63.4

Gene sequence:

>1194_bases
ATGATCGATTTCTGGATGGCAGCCGGGCTGTTGCTGCTGGTTGCGCTGAGCTTCTTGCTGATTCCGCTGCTGCGCGGCCA
TCGCGCGCAACGGGAAGAAGACCGCACGGCTCTGAACGTGGCGTTGTATCAGGAGCGACTGAACGAATTGCAGGTTCAGC
AGGAACAGGGCGTGTTGTCGGTGGCGCAACTGCAGGCTGCACGTACCGAAGCAGCGCGCGAGCTGCTTGCCGACACCGAA
GGTGCGGAGCCCGACCGGACTTCGCGCCTGGGCAAGCCCTTGCTGGTGCTTGCTGCGCTGCTGGTCCCGATGTTGGGGCT
GGCGGGCTATCTCCAGCTGGGGGCTAGCGACCGGGTTGAACTGAGTCGCGAATTCGCTCGACCACCGACCTCGCTGGCAG
ACATGACCCAGCGTCTGGAGCGCAGCGTGCAGGCTCAACCGGACTCAGCCGAAAACCTGTATTTTCTGGCGCGCAGCTAC
ATGGCGCAGAACCGCCCGGGTGATGCCGCGCAGATGTTCGAGCGTTCGGTAGCGCTGGCCGGACGGCAGCCCGAGTTGCT
CGGACAATGGGCTCAGGCGCTGTATTTCGCCAGCGACAAGCACTTCACACCCCAGGTGCAGGCGCTGACCGACGAAGCGC
TGCAGGCTGACCCCAGGGAAGTCACCAGCCTTGGTCTGCTGGGGATTGCCGCTTTCGAAACTCAGCGCTATCAGGCGGCG
GTGGATTACTGGACCCGGTTGCTCGCGGCACTGCCCGCAGATGACGCATCGCGTTCGGCACTGGAAGGCGGCATTGCCCG
CGCCAGAGATAACCTCGCCAAACGCGCGGCAGACGCGGCGCCGGCAGTTAAGGCGAAGTCGATAAAAATTCATGTCGAGC
TGGCTGCGGCGCTTCAAGGCAAGGTAAGGCCGAACGACAGCGTGTTCATCTTCGCCCGCGCCATCAATGGCCCGGCGGCG
CCTTTGGCGGTCAAACGCATTACCGTGGCGGACCTGCCTGCCGAGGTGGAACTGAGCGATGCCGACGCAATGATGCCGCA
ACTGAACCTGTCGAACTTTGCGCAAGTCCAACTGGTTGCGCGAGTGTCTCGCGCAGGGCAGCCAACCACCGGTGAGTGGG
TCGGCCGCAGTCAGCCACTGGCCAGTGATACTGCGGCGCAGCAGGCGTTGACCATTGACAGTCCGGATAACTAG

Upstream 100 bases:

>100_bases
TTATCGTCAGCCGACGCCGCAAGGCGCAATCCGCACAGCCCGATGAGCTTTCCGAAGATGAAAGGCAGCGTCTTGCCACC
TTGCTGAATGAGCACCGCCC

Downstream 100 bases:

>100_bases
AGAATTCGCTTATGTACCGTACCGCACGCATCACCTTGTTGGGTCTGGTCGTTGGCCTGAGTGCCTGTGCTGTCCAGCAT
CCGGCACCGCCACATAGCCA

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MIDFWMAAGLLLLVALSFLLIPLLRGHRAQREEDRTALNVALYQERLNELQVQQEQGVLSVAQLQAARTEAARELLADTE
GAEPDRTSRLGKPLLVLAALLVPMLGLAGYLQLGASDRVELSREFARPPTSLADMTQRLERSVQAQPDSAENLYFLARSY
MAQNRPGDAAQMFERSVALAGRQPELLGQWAQALYFASDKHFTPQVQALTDEALQADPREVTSLGLLGIAAFETQRYQAA
VDYWTRLLAALPADDASRSALEGGIARARDNLAKRAADAAPAVKAKSIKIHVELAAALQGKVRPNDSVFIFARAINGPAA
PLAVKRITVADLPAEVELSDADAMMPQLNLSNFAQVQLVARVSRAGQPTTGEWVGRSQPLASDTAAQQALTIDSPDN

Sequences:

>Translated_397_residues
MIDFWMAAGLLLLVALSFLLIPLLRGHRAQREEDRTALNVALYQERLNELQVQQEQGVLSVAQLQAARTEAARELLADTE
GAEPDRTSRLGKPLLVLAALLVPMLGLAGYLQLGASDRVELSREFARPPTSLADMTQRLERSVQAQPDSAENLYFLARSY
MAQNRPGDAAQMFERSVALAGRQPELLGQWAQALYFASDKHFTPQVQALTDEALQADPREVTSLGLLGIAAFETQRYQAA
VDYWTRLLAALPADDASRSALEGGIARARDNLAKRAADAAPAVKAKSIKIHVELAAALQGKVRPNDSVFIFARAINGPAA
PLAVKRITVADLPAEVELSDADAMMPQLNLSNFAQVQLVARVSRAGQPTTGEWVGRSQPLASDTAAQQALTIDSPDN
>Mature_397_residues
MIDFWMAAGLLLLVALSFLLIPLLRGHRAQREEDRTALNVALYQERLNELQVQQEQGVLSVAQLQAARTEAARELLADTE
GAEPDRTSRLGKPLLVLAALLVPMLGLAGYLQLGASDRVELSREFARPPTSLADMTQRLERSVQAQPDSAENLYFLARSY
MAQNRPGDAAQMFERSVALAGRQPELLGQWAQALYFASDKHFTPQVQALTDEALQADPREVTSLGLLGIAAFETQRYQAA
VDYWTRLLAALPADDASRSALEGGIARARDNLAKRAADAAPAVKAKSIKIHVELAAALQGKVRPNDSVFIFARAINGPAA
PLAVKRITVADLPAEVELSDADAMMPQLNLSNFAQVQLVARVSRAGQPTTGEWVGRSQPLASDTAAQQALTIDSPDN

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1790513, Length=147, Percent_Identity=29.2517006802721, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42991; Mature: 42991

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFWMAAGLLLLVALSFLLIPLLRGHRAQREEDRTALNVALYQERLNELQVQQEQGVLS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VAQLQAARTEAARELLADTEGAEPDRTSRLGKPLLVLAALLVPMLGLAGYLQLGASDRVE
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LSREFARPPTSLADMTQRLERSVQAQPDSAENLYFLARSYMAQNRPGDAAQMFERSVALA
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
GRQPELLGQWAQALYFASDKHFTPQVQALTDEALQADPREVTSLGLLGIAAFETQRYQAA
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VDYWTRLLAALPADDASRSALEGGIARARDNLAKRAADAAPAVKAKSIKIHVELAAALQG
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECEEEEEEEEEHHHCC
KVRPNDSVFIFARAINGPAAPLAVKRITVADLPAEVELSDADAMMPQLNLSNFAQVQLVA
CCCCCCCEEEEEEECCCCCCCHHHHEEEEECCCCCEEECCHHHHCCCCCCCHHHHHHHHH
RVSRAGQPTTGEWVGRSQPLASDTAAQQALTIDSPDN
HHHHCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCC
>Mature Secondary Structure
MIDFWMAAGLLLLVALSFLLIPLLRGHRAQREEDRTALNVALYQERLNELQVQQEQGVLS
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
VAQLQAARTEAARELLADTEGAEPDRTSRLGKPLLVLAALLVPMLGLAGYLQLGASDRVE
HHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LSREFARPPTSLADMTQRLERSVQAQPDSAENLYFLARSYMAQNRPGDAAQMFERSVALA
HHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
GRQPELLGQWAQALYFASDKHFTPQVQALTDEALQADPREVTSLGLLGIAAFETQRYQAA
CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VDYWTRLLAALPADDASRSALEGGIARARDNLAKRAADAAPAVKAKSIKIHVELAAALQG
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECEEEEEEEEEHHHCC
KVRPNDSVFIFARAINGPAAPLAVKRITVADLPAEVELSDADAMMPQLNLSNFAQVQLVA
CCCCCCCEEEEEEECCCCCCCHHHHEEEEECCCCCEEECCHHHHCCCCCCCHHHHHHHHH
RVSRAGQPTTGEWVGRSQPLASDTAAQQALTIDSPDN
HHHHCCCCCCCCCCCCCCCCCCHHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]