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The map label for this gene is yhcM [H]

Identifier: 66046591

GI number: 66046591

Start: 4019832

End: 4020947

Strand: Reverse

Name: yhcM [H]

Synonym: Psyr_3362

Alternate gene names: 66046591

Gene position: 4020947-4019832 (Counterclockwise)

Preceding gene: 66046592

Following gene: 66046589

Centisome position: 65.99

GC content: 62.63

Gene sequence:

>1116_bases
ATGGATGCCGTCTCTCCTCTGCAAGCCTACGAACGTGCCGTCCAGCGGGGTTTTCAACCCGATCAGGCGCAGTTGCAGGC
TGCCCGGCAGTTGCAGGCGTGTTACGAGGGGCTTGCCGACGCTCGCGGTCGGGCACGCGGCGTTTATCTGTGGGGACCGG
TCGGGCGTGGCAAGACCTGGTTGATGGACCGCTTTTTCGAGAGCCTGAGCGTACCGGCCCGGCGTCAGCATTTTCATCAC
TTCATGCGCTGGGTGCACAAACGCATGTTCGAGTTGATGGGTACATCCCAGCCGCTGACTGTGGTCGCCAGGGAGCTGGC
GCGTGACGTGCGGGTGATGTGTTTCGACGAGCTGTTCGTCACCGATATCGGCGATGCAGTGATCCTCGGCGGGCTGCTGC
AGGTGATGTTCGAAGAGGGCGTGGTGCTGGTCTGCACGTCCAACCAGCCACCGGAGCAGTTATACAGCCATGGCCATAAT
CGCGAGCGCTTCCTGCCAGCGGTTGCGGCCATTCTCAAGTACATGGATGTCGTGGCCGTCGACGGCGGCGAGGATCACCG
GCTGCACCCCGGGCAACTGCATCAGCGTTACTGGATTGCCGAAGCCGGTCGACCCAGCGCCTTGCAGGGCATCTTCGACG
CGTTGAGCGCGGATCAGCCGGTTCACGATTCGCAGGTCATGCTCGGTTATCGCAGCATCAACGTGGTTCAGCATTCCGAC
ACGGCCGTGTGGTGCCGCTATCGCGACCTTTGCGAACAGCCGCTGGCGGCCATGGATTTCATCGCCTTGTGCGATCGCTT
TTCGGTGATTCTGCTCAGCGAGGTGCCGCTGCTGGGGGCCGCGCAGCGCGAAGCGAAAATTGCCCGCGGCACCGAGGATG
GCGTTGAGCAGGTGACCGCAGGCGATCGCGAGCTGCCGCAGTTGTCGCCCAACGATGATGGCGTGCGCCGTTTCATCGCG
CTGGTCGACGAGTGCTATGACCGGCGCATTCCGCTGTATGTCGAAGCGCCGGTGCCGATGGACGAGCTGTACACCGAGGG
CTACCTGTCGTTTGCCTTCCGGCGCACCCTCAGTCGACTTCAGGAAATGCAGCTGGAGCGTTTCACCGAGTCCTGA

Upstream 100 bases:

>100_bases
GCATGCCTGAGTTGAGTTGATGAGTTGATGAGTTGCGTTGCGCGACGCAGCCTCGTATAGGCTGGATGTCTTTTCTCCGA
TAGCGAAGGGTGTGTGCCTG

Downstream 100 bases:

>100_bases
CGCTCAGCTCGCGTCCCGGCGGCGCTGGGCCAGCATATGCTTGGCGCCTTCGATCATCAGGACCACCACGGCCAGCCAGA
TCGGCAGGTACGTCAGCCAT

Product: AFG1-like ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 371

Protein sequence:

>371_residues
MDAVSPLQAYERAVQRGFQPDQAQLQAARQLQACYEGLADARGRARGVYLWGPVGRGKTWLMDRFFESLSVPARRQHFHH
FMRWVHKRMFELMGTSQPLTVVARELARDVRVMCFDELFVTDIGDAVILGGLLQVMFEEGVVLVCTSNQPPEQLYSHGHN
RERFLPAVAAILKYMDVVAVDGGEDHRLHPGQLHQRYWIAEAGRPSALQGIFDALSADQPVHDSQVMLGYRSINVVQHSD
TAVWCRYRDLCEQPLAAMDFIALCDRFSVILLSEVPLLGAAQREAKIARGTEDGVEQVTAGDRELPQLSPNDDGVRRFIA
LVDECYDRRIPLYVEAPVPMDELYTEGYLSFAFRRTLSRLQEMQLERFTES

Sequences:

>Translated_371_residues
MDAVSPLQAYERAVQRGFQPDQAQLQAARQLQACYEGLADARGRARGVYLWGPVGRGKTWLMDRFFESLSVPARRQHFHH
FMRWVHKRMFELMGTSQPLTVVARELARDVRVMCFDELFVTDIGDAVILGGLLQVMFEEGVVLVCTSNQPPEQLYSHGHN
RERFLPAVAAILKYMDVVAVDGGEDHRLHPGQLHQRYWIAEAGRPSALQGIFDALSADQPVHDSQVMLGYRSINVVQHSD
TAVWCRYRDLCEQPLAAMDFIALCDRFSVILLSEVPLLGAAQREAKIARGTEDGVEQVTAGDRELPQLSPNDDGVRRFIA
LVDECYDRRIPLYVEAPVPMDELYTEGYLSFAFRRTLSRLQEMQLERFTES
>Mature_371_residues
MDAVSPLQAYERAVQRGFQPDQAQLQAARQLQACYEGLADARGRARGVYLWGPVGRGKTWLMDRFFESLSVPARRQHFHH
FMRWVHKRMFELMGTSQPLTVVARELARDVRVMCFDELFVTDIGDAVILGGLLQVMFEEGVVLVCTSNQPPEQLYSHGHN
RERFLPAVAAILKYMDVVAVDGGEDHRLHPGQLHQRYWIAEAGRPSALQGIFDALSADQPVHDSQVMLGYRSINVVQHSD
TAVWCRYRDLCEQPLAAMDFIALCDRFSVILLSEVPLLGAAQREAKIARGTEDGVEQVTAGDRELPQLSPNDDGVRRFIA
LVDECYDRRIPLYVEAPVPMDELYTEGYLSFAFRRTLSRLQEMQLERFTES

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=372, Percent_Identity=31.7204301075269, Blast_Score=176, Evalue=4e-44,
Organism=Escherichia coli, GI1789627, Length=400, Percent_Identity=34.5, Blast_Score=224, Evalue=9e-60,
Organism=Caenorhabditis elegans, GI17505769, Length=370, Percent_Identity=27.2972972972973, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6320783, Length=344, Percent_Identity=27.3255813953488, Blast_Score=131, Evalue=2e-31,
Organism=Drosophila melanogaster, GI20129913, Length=455, Percent_Identity=26.3736263736264, Blast_Score=140, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42143; Mature: 42143

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAVSPLQAYERAVQRGFQPDQAQLQAARQLQACYEGLADARGRARGVYLWGPVGRGKTW
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
LMDRFFESLSVPARRQHFHHFMRWVHKRMFELMGTSQPLTVVARELARDVRVMCFDELFV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
TDIGDAVILGGLLQVMFEEGVVLVCTSNQPPEQLYSHGHNRERFLPAVAAILKYMDVVAV
HHCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHEEE
DGGEDHRLHPGQLHQRYWIAEAGRPSALQGIFDALSADQPVHDSQVMLGYRSINVVQHSD
CCCCCCCCCCHHHHHHHHECCCCCCHHHHHHHHHHCCCCCCCCCHHEEEHHHEEEEEECC
TAVWCRYRDLCEQPLAAMDFIALCDRFSVILLSEVPLLGAAQREAKIARGTEDGVEQVTA
CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
GDRELPQLSPNDDGVRRFIALVDECYDRRIPLYVEAPVPMDELYTEGYLSFAFRRTLSRL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
QEMQLERFTES
HHHHHHHHCCC
>Mature Secondary Structure
MDAVSPLQAYERAVQRGFQPDQAQLQAARQLQACYEGLADARGRARGVYLWGPVGRGKTW
CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHH
LMDRFFESLSVPARRQHFHHFMRWVHKRMFELMGTSQPLTVVARELARDVRVMCFDELFV
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
TDIGDAVILGGLLQVMFEEGVVLVCTSNQPPEQLYSHGHNRERFLPAVAAILKYMDVVAV
HHCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHEEE
DGGEDHRLHPGQLHQRYWIAEAGRPSALQGIFDALSADQPVHDSQVMLGYRSINVVQHSD
CCCCCCCCCCHHHHHHHHECCCCCCHHHHHHHHHHCCCCCCCCCHHEEEHHHEEEEEECC
TAVWCRYRDLCEQPLAAMDFIALCDRFSVILLSEVPLLGAAQREAKIARGTEDGVEQVTA
CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHC
GDRELPQLSPNDDGVRRFIALVDECYDRRIPLYVEAPVPMDELYTEGYLSFAFRRTLSRL
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
QEMQLERFTES
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]