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The map label for this gene is yahB [H]

Identifier: 66046586

GI number: 66046586

Start: 4015162

End: 4016046

Strand: Reverse

Name: yahB [H]

Synonym: Psyr_3357

Alternate gene names: 66046586

Gene position: 4016046-4015162 (Counterclockwise)

Preceding gene: 66046589

Following gene: 66046585

Centisome position: 65.9

GC content: 63.39

Gene sequence:

>885_bases
ATGAGTTATTCACCCGAAGCCCTGGAAGCCTTCGCCCAGATTGCTGCGCTGGGTTCGTTCAGCGCCGCCGCACGCCGGCT
GGGCAAGAGTCAATCGACCATCAGTGAAGCAATCGCCCGCCTGGAAATCGATCTGGGCCTGGAGCTGTTCGATCGTTCTT
CCAGGCAACCGGTCCTGACCGAAGCGGGGAGGGTCATGCTGGGTCGTGTCGATGATCTGCTGTGCGCCTCGGACCGGCTG
CGTCGCGCGGCTGCGCGGCTTGCGGCAGGCGTCGAGCCACGGCTGACGCTGGTGCTGTCGGATGCCAACCAGTTTGCCGA
TTTCGAACGGCTGATGACCGAGCTCGATCAACGCTTTCCAGAGCTGGAGATGGAATGCGTGTTCGCCGAGCATGGCGACG
CCATCAGCCTGGTGCAGTCGGGGAGGGCGTCACTGGGGCTGCTGTCGGCACAAGCCAGCTATCCACCGGAAATCGGTCAC
GCGACCATCGATGAAAGTGCCGATTTCGGGCTGTTCGTGTCGCACAAACATCCGCTTGCCGCGCTGGAACGGGTCGATTA
CCAACAGCTGGCCCGCTATCGCGCCTTGCGCCTCAATACGCTGATCGAGCACAGCATCCCCACTGACGACCTGCCCACCA
GCGGCCATCGGCATTGGTCGGCACCCAATTACCTGCTGTTGATGGACATGGCTGCGTTCGGGTTTGGCTGGTCGGCATTG
CCGCGCTGGCTGGTGTCGCGCTACTCGGGCGGACTGCTGAAAGAACTGCAAGTCTCAGGCTGGCCACGGCGCTCGGCGGT
GGACGTCATCTGGTCGTTCCAGCGCAGTCTGGGGCCTGCGGGGGCGTGGCTGCTGGAGTCGCTGGTACCGTTTGCGGGAG
AGTGA

Upstream 100 bases:

>100_bases
TAACTACGCTGCCCTTGGTGCTGGTTGATGGCAGCATTATCATCGGTGTTTGCGTTAAGCTGAAAATCAATACCATCGGT
TAAACCGATTTGAGAGTGCC

Downstream 100 bases:

>100_bases
GGCGGGTTTGCGCAATTTCCTCTACGCCACAAGCCCTTCCAAACCTCGCGACTGCACCAGAATCCCGCTATAAAGAGTGC
CTGCAACCCGACAGCAGAAG

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MSYSPEALEAFAQIAALGSFSAAARRLGKSQSTISEAIARLEIDLGLELFDRSSRQPVLTEAGRVMLGRVDDLLCASDRL
RRAAARLAAGVEPRLTLVLSDANQFADFERLMTELDQRFPELEMECVFAEHGDAISLVQSGRASLGLLSAQASYPPEIGH
ATIDESADFGLFVSHKHPLAALERVDYQQLARYRALRLNTLIEHSIPTDDLPTSGHRHWSAPNYLLLMDMAAFGFGWSAL
PRWLVSRYSGGLLKELQVSGWPRRSAVDVIWSFQRSLGPAGAWLLESLVPFAGE

Sequences:

>Translated_294_residues
MSYSPEALEAFAQIAALGSFSAAARRLGKSQSTISEAIARLEIDLGLELFDRSSRQPVLTEAGRVMLGRVDDLLCASDRL
RRAAARLAAGVEPRLTLVLSDANQFADFERLMTELDQRFPELEMECVFAEHGDAISLVQSGRASLGLLSAQASYPPEIGH
ATIDESADFGLFVSHKHPLAALERVDYQQLARYRALRLNTLIEHSIPTDDLPTSGHRHWSAPNYLLLMDMAAFGFGWSAL
PRWLVSRYSGGLLKELQVSGWPRRSAVDVIWSFQRSLGPAGAWLLESLVPFAGE
>Mature_293_residues
SYSPEALEAFAQIAALGSFSAAARRLGKSQSTISEAIARLEIDLGLELFDRSSRQPVLTEAGRVMLGRVDDLLCASDRLR
RAAARLAAGVEPRLTLVLSDANQFADFERLMTELDQRFPELEMECVFAEHGDAISLVQSGRASLGLLSAQASYPPEIGHA
TIDESADFGLFVSHKHPLAALERVDYQQLARYRALRLNTLIEHSIPTDDLPTSGHRHWSAPNYLLLMDMAAFGFGWSALP
RWLVSRYSGGLLKELQVSGWPRRSAVDVIWSFQRSLGPAGAWLLESLVPFAGE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786508, Length=304, Percent_Identity=25, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082024, Length=271, Percent_Identity=24.3542435424354, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786713, Length=120, Percent_Identity=35, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32367; Mature: 32236

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSPEALEAFAQIAALGSFSAAARRLGKSQSTISEAIARLEIDLGLELFDRSSRQPVLT
CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCHHH
EAGRVMLGRVDDLLCASDRLRRAAARLAAGVEPRLTLVLSDANQFADFERLMTELDQRFP
HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
ELEMECVFAEHGDAISLVQSGRASLGLLSAQASYPPEIGHATIDESADFGLFVSHKHPLA
CCEEEEEECCCCCCHHHHHCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHH
ALERVDYQQLARYRALRLNTLIEHSIPTDDLPTSGHRHWSAPNYLLLMDMAAFGFGWSAL
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCHHHH
PRWLVSRYSGGLLKELQVSGWPRRSAVDVIWSFQRSLGPAGAWLLESLVPFAGE
HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SYSPEALEAFAQIAALGSFSAAARRLGKSQSTISEAIARLEIDLGLELFDRSSRQPVLT
CCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCHHH
EAGRVMLGRVDDLLCASDRLRRAAARLAAGVEPRLTLVLSDANQFADFERLMTELDQRFP
HHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
ELEMECVFAEHGDAISLVQSGRASLGLLSAQASYPPEIGHATIDESADFGLFVSHKHPLA
CCEEEEEECCCCCCHHHHHCCCHHHEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCHHH
ALERVDYQQLARYRALRLNTLIEHSIPTDDLPTSGHRHWSAPNYLLLMDMAAFGFGWSAL
HHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEHHHHHHCCCHHHH
PRWLVSRYSGGLLKELQVSGWPRRSAVDVIWSFQRSLGPAGAWLLESLVPFAGE
HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]