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The map label for this gene is rbsC [H]

Identifier: 66046492

GI number: 66046492

Start: 3907349

End: 3908374

Strand: Reverse

Name: rbsC [H]

Synonym: Psyr_3263

Alternate gene names: 66046492

Gene position: 3908374-3907349 (Counterclockwise)

Preceding gene: 66046493

Following gene: 66046491

Centisome position: 64.14

GC content: 61.4

Gene sequence:

>1026_bases
ATGAGCGACGCGATTCTGCAAAATAAACCGGCCATGACGCCGACCAGAAGCAAACGGCGGCTGCCCACCGAGCTGAGCAT
CTTTCTGGTGCTGATCGGCATCGGCCTGATCTTTGAACTGTTCGGCTGGATCGTCCGCGATCAAAGCTTCCTGCTCAATT
CGCAGCGTCTGGTATTGATGATCCTGCAGGTGTCGATCATCGGCTTGCTGGCCATCGGTGTGACCCAGGTGATCATCACC
ACCGGCATCGACCTCTCCTCCGGCTCGGTGCTCGCGCTTTCAGCGATGATTGCCGCGAGCCTGGCTCAGACTTCCGACTT
CTCCCGGGCGGTGTTCCCGTCGCTGACCGACCTGCCGGTATGGATTCCGGTCGTCGTCGGTCTCGGGGTCGGGCTGCTGG
CCGGTGCCATCAACGGCAGCATCATTGCTATAACCGGCATTCCTCCCTTCATTGCCACGCTGGGCATGATGGTCTCTGCG
CGCGGCCTGGCACGTTTCTATACCGAAGGCCAGCCGGTGAGCATGCTCTCCGACTCGTACACGGCCATTGGCCAGGGCGC
GATGCCGGTGATCATCTTCCTGGTGGTGGCGGTCATCTTTCACATCGCCCTGCGTTACACCAAGTACGGCAAGTACACCT
ACGCCATTGGCGGCAACATGCAGGCGGCACGTACGTCTGGGATCAACGTCAAGCGCCATCTGGTCATCGTCTACAGCATC
GCCGGGCTGCTGGCCGGGCTGGCGGGTGTGGTTGCCTCGGCGCGAGCGGCAACCGGGCAGGCCGGGATGGGCATGTCCTA
CGAGCTGGACGCCATCGCCGCTGCGGTCATCGGTGGCACCAGCCTTTCCGGTGGGGTGGGGCGGATCACTGGTACAGTGA
TCGGTGCGCTGATCCTCGGCGTGATGGCCAGCGGCTTCACCTTTGTCGGCGTGGACGCCTATGTGCAGGACATTATCAAA
GGCCTGATCATTGTCGTGGCCGTGGTAATCGATCAATATCGCAACAAGCGCAAGACCAAGCGCTGA

Upstream 100 bases:

>100_bases
AAGCGACCCAGGAAAAAGTCATGCATCTGGCCTCCGGCCACAAGGTTCATTGAGTTCGCACTACAGGGCTCGGTAGAAGA
AGAACAAGAGGATAACGAAC

Downstream 100 bases:

>100_bases
TTCAATCATCTGCATCAAAGGGCCTTTTCAGGCCCTTTTGTGCGTTGGATGTTGCAGGAACCGATTCGTTGTCAATGGGT
CAGAGCCTCATCAAGCAACA

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MSDAILQNKPAMTPTRSKRRLPTELSIFLVLIGIGLIFELFGWIVRDQSFLLNSQRLVLMILQVSIIGLLAIGVTQVIIT
TGIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLTDLPVWIPVVVGLGVGLLAGAINGSIIAITGIPPFIATLGMMVSA
RGLARFYTEGQPVSMLSDSYTAIGQGAMPVIIFLVVAVIFHIALRYTKYGKYTYAIGGNMQAARTSGINVKRHLVIVYSI
AGLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLSGGVGRITGTVIGALILGVMASGFTFVGVDAYVQDIIK
GLIIVVAVVIDQYRNKRKTKR

Sequences:

>Translated_341_residues
MSDAILQNKPAMTPTRSKRRLPTELSIFLVLIGIGLIFELFGWIVRDQSFLLNSQRLVLMILQVSIIGLLAIGVTQVIIT
TGIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLTDLPVWIPVVVGLGVGLLAGAINGSIIAITGIPPFIATLGMMVSA
RGLARFYTEGQPVSMLSDSYTAIGQGAMPVIIFLVVAVIFHIALRYTKYGKYTYAIGGNMQAARTSGINVKRHLVIVYSI
AGLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLSGGVGRITGTVIGALILGVMASGFTFVGVDAYVQDIIK
GLIIVVAVVIDQYRNKRKTKR
>Mature_340_residues
SDAILQNKPAMTPTRSKRRLPTELSIFLVLIGIGLIFELFGWIVRDQSFLLNSQRLVLMILQVSIIGLLAIGVTQVIITT
GIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLTDLPVWIPVVVGLGVGLLAGAINGSIIAITGIPPFIATLGMMVSAR
GLARFYTEGQPVSMLSDSYTAIGQGAMPVIIFLVVAVIFHIALRYTKYGKYTYAIGGNMQAARTSGINVKRHLVIVYSIA
GLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLSGGVGRITGTVIGALILGVMASGFTFVGVDAYVQDIIKG
LIIVVAVVIDQYRNKRKTKR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=285, Percent_Identity=42.8070175438597, Blast_Score=180, Evalue=1e-46,
Organism=Escherichia coli, GI1788471, Length=288, Percent_Identity=36.8055555555556, Blast_Score=155, Evalue=5e-39,
Organism=Escherichia coli, GI1790524, Length=331, Percent_Identity=33.8368580060423, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI145693152, Length=282, Percent_Identity=35.8156028368794, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1788896, Length=294, Percent_Identity=32.9931972789116, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1789992, Length=392, Percent_Identity=30.3571428571429, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI145693214, Length=253, Percent_Identity=38.3399209486166, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87082395, Length=303, Percent_Identity=33.003300330033, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1787793, Length=310, Percent_Identity=31.9354838709677, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787794, Length=286, Percent_Identity=28.6713286713287, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35647; Mature: 35516

Theoretical pI: Translated: 10.47; Mature: 10.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAILQNKPAMTPTRSKRRLPTELSIFLVLIGIGLIFELFGWIVRDQSFLLNSQRLVLM
CCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHH
ILQVSIIGLLAIGVTQVIITTGIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLTDLPV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHH
WIPVVVGLGVGLLAGAINGSIIAITGIPPFIATLGMMVSARGLARFYTEGQPVSMLSDSY
HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCH
TAIGQGAMPVIIFLVVAVIFHIALRYTKYGKYTYAIGGNMQAARTSGINVKRHLVIVYSI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCHHHHHHHHHHH
AGLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLSGGVGRITGTVIGALILG
HHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
VMASGFTFVGVDAYVQDIIKGLIIVVAVVIDQYRNKRKTKR
HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDAILQNKPAMTPTRSKRRLPTELSIFLVLIGIGLIFELFGWIVRDQSFLLNSQRLVLM
CCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCHHHHH
ILQVSIIGLLAIGVTQVIITTGIDLSSGSVLALSAMIAASLAQTSDFSRAVFPSLTDLPV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHH
WIPVVVGLGVGLLAGAINGSIIAITGIPPFIATLGMMVSARGLARFYTEGQPVSMLSDSY
HHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCH
TAIGQGAMPVIIFLVVAVIFHIALRYTKYGKYTYAIGGNMQAARTSGINVKRHLVIVYSI
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHCCCCCHHHHHHHHHHH
AGLLAGLAGVVASARAATGQAGMGMSYELDAIAAAVIGGTSLSGGVGRITGTVIGALILG
HHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
VMASGFTFVGVDAYVQDIIKGLIIVVAVVIDQYRNKRKTKR
HHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]