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The map label for this gene is ligD

Identifier: 66046474

GI number: 66046474

Start: 3886134

End: 3888734

Strand: Reverse

Name: ligD

Synonym: Psyr_3245

Alternate gene names: NA

Gene position: 3888734-3886134 (Counterclockwise)

Preceding gene: 66046475

Following gene: 66046472

Centisome position: 63.82

GC content: 62.32

Gene sequence:

>2601_bases
ATGGCCAAGCCCGCCAGTGAATACACCCGCAAGCGCAATTTCGCCATCACCTCCGAGCCTGCGGAGAGCAAGCGTAAGGG
CAAAGGCAAGTCGCAGCCTGGCGCGCTCGGTTTCGTGATCCAGAAGCATGACGCACGGAACCTGCACTACGACTTTCGAC
TGGAGCTCGATGGCACGCTCAAGAGCTGGGCCGTGCCCAAAGGTCCGAGCCTGGACCCCACGCAAAAGCGTCTGGCAGTG
CATGTCGAAGACCATCCGCTGGACTACGCCGGCTTCGAGGGCAGTATCCCGCAGGGGCAGTACGGTGGCGGCGATGTGAT
TGTCTGGGACCGGGGTGTCTGGCAGCCGCACGGTGATCCGCAAAAGACCTACGAGGAAGGCAAACTCAAGTTCACCCTGG
TCGGCGAGAAACTCAGCGGTGACTGGGCGCTGGTGCGTACCCGGCTCAAGGGCAGCGGCAGCAAGGAACAGTGGCTGCTG
ATCAAGGAAAAGGATGACGTCGCGCGACCTGCTGCCGAGTACGACATCACCCATGAGCAGCCGCAAAGCGTGATCAGTGG
AGCTCATGTCGGCAAGCAACGCGGCACCTCGAAAAAGTCCGGGGCCAGCGCCGCCAAAGCCAAGGCCGCGACACCCGCCG
CAGCAAAAGCGTCAATGCCCGCTGCAAAGCCGGCGCGCAGGAAGGCGAAATCGGCTTTCCTGGACACGCTTGCGCCGCAA
CTGGCGACGCTGGTGGAGGCGCCGCCAGCCGGTGACTGGCTGTATGAAATCAAATTCGATGGCTACCGCATGCTGACTCG
TATTCAGGGCGACGATGTGCGGCTGTTTACCCGCAACGGGCATGACTGGACCGAGCGGCTGCCGGAACTGGTCAAGGCGC
TCAAGGGCATGAAGCTGCGCGACAGCTGGTTCGACGGCGAAGTGGTGGTTCTCGATGAGCAGGGGCTGCCCGACTTCCAG
GGCCTGCAGAATGCCTTTGACGCGGGCAACAGCAAGGACATTCTGTATTACCTGTTCGACATGCCGTTTCTGAGCGCGGA
GGACCTGCGTGAAGTGCCGCTCGAGCAGCGTCGGGATGCCTTGAAACAAGTTCTCGACGCACAGAAAAGTCGCCTGTTGC
GTTACTCGGATGCCTTTCAGGCAGGCCATCAGGACATTGTCGCGAGTGCTGCGGCAATGGGCCTGGAAGGGGTGATCGGC
AAGCGTGCCGGCAGTGCCTACGTCAGCAAGCGCAATGCCGACTGGATCAAGCTCAAATGTCGCTTGCGACAGGAATTCGT
GGTCGTCGGCTATACGGCGCCGCAGGGCAGCCGATCGGCGTTCGGGGCCTTGTTGCTTGCGGTCAATGCCGGTGAGGACG
GGTTGATCTATGCCGGGCGGGTCGGCACCGGGTTCACTGAAGTGAGCCTTGAGCAACTGCATAAACAGCTGAAGAAGTTG
CAGCGCAAGGATTCACCGCTGGCCAAAAAGCTCTCCGCGTCCCAGGCGCGTGGCGTGCAGTGGGTGGCGCCGCAACTGGT
CTGCGAAGCCGAGTTCGCCCAGTGGACCCGCGAAGGCATCGTGCGCCAGGCTGCCTTTGTCGGGCTGCGTAGCGACAAGC
CCGCCAAGGACGTGGTGCGTGAAGACGCTCAGCCTGCCAAAGTGGCCAGCCAGCCCCCAACCACAACGGCAGCGCCCAAG
GCACGCAAAAAGGCCGCGCAGGGAAAGGTTGATGTAGCGGGCACCGGCATCAGTCATCCGGACCGCGTCATCGACAGCAA
GTCCGGCACCAGCAAGATCGAACTGGCGCAGTTTTACCAGTCCATCGCCGACTGGATTCTGCCCTACCTGAACAAGCGTC
CCGTGGCTCTGCTGCGCTGTCCGGAGGGCATCGACGGTGAGCAGTTTTTCCAGAAGCATGCCGAACATCTGGCGATCCCG
CACATCAGGCAACTGGATCGTGCCCTGGACCCCGGGCATGCCGCGCTGATGGAAATAGATTCGGTGCCGGCACTGGTCGG
TGCTGCGCAAATGGGCGCCATCGAGCTGCATACCTGGGGCGCGACGCGTGACAGAATCGAAACGCCGGACCATTTCGTGC
TGGACCTTGATCCCGATCCGGCACTGCCCTGGCGCAGCATGATCGAGGCCACGCAAATGGTGCTCGCCGTGCTGGAAGAA
CTGGGGCTGGAGGCTTTCCTCAAGACCAGCGGTGGCAAGGGCATGCACATCATTGTGCCGTTGGCGCGCCAGGCAGACTG
GGACACGGTAAAGGCGTTCGCCAAGGCCATCGCCGAGTTTGCCAGCCGTCAGCTGCCGGAACGCTTCACCGCCACCATGG
GGCCGAAAAACCGCGTCGGAAAAATCTTCATCGATTACCTGCGCAACAGCCGCGGCGGCAGCACCGTAACCGCCTACTCA
GTACGCGCCCGGCCCGGGTTGCCGGTCTCGGTGCCGATCGCGCTGGATGAGCTGGCGGGTCTGAAGTCGTCGGCACAGTG
GGACATCACCAACCTTGAGCAGCGTTTGAAGCGGCTCAAGGACGACCCGTGGGCCGGTTACAGCAACCGGCGCAAAATCA
CGCAGAGGATGTGGAAGCAACTGGGTGCGAAACGGCCTTGA

Upstream 100 bases:

>100_bases
CGAAGGAAAAACCGGCCGACAAGGACGGTGCCAGGCCCAAGCGGCCCGCCGCACGTAAGAAAACCAGCAAAGCCTCTTGA
GCCCTACGGAGTGACCGGTG

Downstream 100 bases:

>100_bases
GGCAAGGCCACTGTCCGGGTTTTGCAAGGGGATACGTGGGCCGGCACGCCTGATCATAGCTCGCATGCCGGCCGCACGTT
GAGTGCTCAGAGAATCCGGT

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 866; Mature: 865

Protein sequence:

>866_residues
MAKPASEYTRKRNFAITSEPAESKRKGKGKSQPGALGFVIQKHDARNLHYDFRLELDGTLKSWAVPKGPSLDPTQKRLAV
HVEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGVWQPHGDPQKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLL
IKEKDDVARPAAEYDITHEQPQSVISGAHVGKQRGTSKKSGASAAKAKAATPAAAKASMPAAKPARRKAKSAFLDTLAPQ
LATLVEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMKLRDSWFDGEVVVLDEQGLPDFQ
GLQNAFDAGNSKDILYYLFDMPFLSAEDLREVPLEQRRDALKQVLDAQKSRLLRYSDAFQAGHQDIVASAAAMGLEGVIG
KRAGSAYVSKRNADWIKLKCRLRQEFVVVGYTAPQGSRSAFGALLLAVNAGEDGLIYAGRVGTGFTEVSLEQLHKQLKKL
QRKDSPLAKKLSASQARGVQWVAPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPAKDVVREDAQPAKVASQPPTTTAAPK
ARKKAAQGKVDVAGTGISHPDRVIDSKSGTSKIELAQFYQSIADWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIP
HIRQLDRALDPGHAALMEIDSVPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEE
LGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFASRQLPERFTATMGPKNRVGKIFIDYLRNSRGGSTVTAYS
VRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKRLKDDPWAGYSNRRKITQRMWKQLGAKRP

Sequences:

>Translated_866_residues
MAKPASEYTRKRNFAITSEPAESKRKGKGKSQPGALGFVIQKHDARNLHYDFRLELDGTLKSWAVPKGPSLDPTQKRLAV
HVEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGVWQPHGDPQKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLL
IKEKDDVARPAAEYDITHEQPQSVISGAHVGKQRGTSKKSGASAAKAKAATPAAAKASMPAAKPARRKAKSAFLDTLAPQ
LATLVEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMKLRDSWFDGEVVVLDEQGLPDFQ
GLQNAFDAGNSKDILYYLFDMPFLSAEDLREVPLEQRRDALKQVLDAQKSRLLRYSDAFQAGHQDIVASAAAMGLEGVIG
KRAGSAYVSKRNADWIKLKCRLRQEFVVVGYTAPQGSRSAFGALLLAVNAGEDGLIYAGRVGTGFTEVSLEQLHKQLKKL
QRKDSPLAKKLSASQARGVQWVAPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPAKDVVREDAQPAKVASQPPTTTAAPK
ARKKAAQGKVDVAGTGISHPDRVIDSKSGTSKIELAQFYQSIADWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIP
HIRQLDRALDPGHAALMEIDSVPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEE
LGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFASRQLPERFTATMGPKNRVGKIFIDYLRNSRGGSTVTAYS
VRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKRLKDDPWAGYSNRRKITQRMWKQLGAKRP
>Mature_865_residues
AKPASEYTRKRNFAITSEPAESKRKGKGKSQPGALGFVIQKHDARNLHYDFRLELDGTLKSWAVPKGPSLDPTQKRLAVH
VEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGVWQPHGDPQKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLLI
KEKDDVARPAAEYDITHEQPQSVISGAHVGKQRGTSKKSGASAAKAKAATPAAAKASMPAAKPARRKAKSAFLDTLAPQL
ATLVEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMKLRDSWFDGEVVVLDEQGLPDFQG
LQNAFDAGNSKDILYYLFDMPFLSAEDLREVPLEQRRDALKQVLDAQKSRLLRYSDAFQAGHQDIVASAAAMGLEGVIGK
RAGSAYVSKRNADWIKLKCRLRQEFVVVGYTAPQGSRSAFGALLLAVNAGEDGLIYAGRVGTGFTEVSLEQLHKQLKKLQ
RKDSPLAKKLSASQARGVQWVAPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPAKDVVREDAQPAKVASQPPTTTAAPKA
RKKAAQGKVDVAGTGISHPDRVIDSKSGTSKIELAQFYQSIADWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPH
IRQLDRALDPGHAALMEIDSVPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEEL
GLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFASRQLPERFTATMGPKNRVGKIFIDYLRNSRGGSTVTAYSV
RARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKRLKDDPWAGYSNRRKITQRMWKQLGAKRP

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

Organism=Homo sapiens, GI4557719, Length=255, Percent_Identity=26.2745098039216, Blast_Score=72, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324578, Length=250, Percent_Identity=29.6, Blast_Score=71, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 95427; Mature: 95296

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPASEYTRKRNFAITSEPAESKRKGKGKSQPGALGFVIQKHDARNLHYDFRLELDGTL
CCCCHHHHHHHCCCEEECCCHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCH
KSWAVPKGPSLDPTQKRLAVHVEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGVWQPHGDP
HHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCH
QKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLLIKEKDDVARPAAEYDITHEQ
HHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC
PQSVISGAHVGKQRGTSKKSGASAAKAKAATPAAAKASMPAAKPARRKAKSAFLDTLAPQ
HHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
LATLVEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMKLR
HHHHHCCCCCCCEEEEEEECCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
DSWFDGEVVVLDEQGLPDFQGLQNAFDAGNSKDILYYLFDMPFLSAEDLREVPLEQRRDA
CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCHHHHHHH
LKQVLDAQKSRLLRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVSKRNADWIKLKC
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEE
RLRQEFVVVGYTAPQGSRSAFGALLLAVNAGEDGLIYAGRVGTGFTEVSLEQLHKQLKKL
EECCEEEEEEEECCCCCHHHHEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
QRKDSPLAKKLSASQARGVQWVAPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPAKDVVR
HHCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
EDAQPAKVASQPPTTTAAPKARKKAAQGKVDVAGTGISHPDRVIDSKSGTSKIELAQFYQ
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCHHHHHHHHH
SIADWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEID
HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHC
SVPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEE
CCHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
LGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFASRQLPERFTATMGPKNRVG
HCHHEEHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHH
KIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKRLK
HHHHHHHHCCCCCCEEEEEEEECCCCCCEEECEEHHHHHCCCCCCCCCHHHHHHHHHHHC
DDPWAGYSNRRKITQRMWKQLGAKRP
CCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
AKPASEYTRKRNFAITSEPAESKRKGKGKSQPGALGFVIQKHDARNLHYDFRLELDGTL
CCCHHHHHHHCCCEEECCCHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCH
KSWAVPKGPSLDPTQKRLAVHVEDHPLDYAGFEGSIPQGQYGGGDVIVWDRGVWQPHGDP
HHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCH
QKTYEEGKLKFTLVGEKLSGDWALVRTRLKGSGSKEQWLLIKEKDDVARPAAEYDITHEQ
HHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCCCCCCC
PQSVISGAHVGKQRGTSKKSGASAAKAKAATPAAAKASMPAAKPARRKAKSAFLDTLAPQ
HHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHH
LATLVEAPPAGDWLYEIKFDGYRMLTRIQGDDVRLFTRNGHDWTERLPELVKALKGMKLR
HHHHHCCCCCCCEEEEEEECCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
DSWFDGEVVVLDEQGLPDFQGLQNAFDAGNSKDILYYLFDMPFLSAEDLREVPLEQRRDA
CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHCCHHHHHHH
LKQVLDAQKSRLLRYSDAFQAGHQDIVASAAAMGLEGVIGKRAGSAYVSKRNADWIKLKC
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCEEEEEE
RLRQEFVVVGYTAPQGSRSAFGALLLAVNAGEDGLIYAGRVGTGFTEVSLEQLHKQLKKL
EECCEEEEEEEECCCCCHHHHEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHH
QRKDSPLAKKLSASQARGVQWVAPQLVCEAEFAQWTREGIVRQAAFVGLRSDKPAKDVVR
HHCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
EDAQPAKVASQPPTTTAAPKARKKAAQGKVDVAGTGISHPDRVIDSKSGTSKIELAQFYQ
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEECCCCCCHHHHCCCCCCCHHHHHHHHH
SIADWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEID
HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHC
SVPALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEE
CCHHHHHHHHCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
LGLEAFLKTSGGKGMHIIVPLARQADWDTVKAFAKAIAEFASRQLPERFTATMGPKNRVG
HCHHEEHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHH
KIFIDYLRNSRGGSTVTAYSVRARPGLPVSVPIALDELAGLKSSAQWDITNLEQRLKRLK
HHHHHHHHCCCCCCEEEEEEEECCCCCCEEECEEHHHHHCCCCCCCCCHHHHHHHHHHHC
DDPWAGYSNRRKITQRMWKQLGAKRP
CCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]